6XBD
Cryo-em structure of mlafedb in nanodiscs with phospholipid substrates
PDB DOI: 10.2210/pdb6xbd/pdb
Classification: LIPID TRANSPORT Organism(s): Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica
Deposited: 2020-06-05 Deposition Author(s): Bhabha, G. , Coudray, N. , Ekiert, D.C. , Isom, G.L. , Macrae, M.R. , Saiduddin, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.05 Å
Cryo-em structure of mlafedb in nanodiscs with phospholipid substrates
Bhabha, G. , Coudray, N. , Ekiert, D.C. , Isom, G.L. , Macrae, M.R. , Saiduddin, M.
Primary Citation of Related Structures: 6XBD
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Phospholipid ABC transporter-binding protein MlaD | A | 201 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | MHHHHHHQHQHENLYFQGMQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIRTSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEPVGTTK |
| Phospholipid ABC transporter-binding protein MlaD | B | 201 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | MHHHHHHQHQHENLYFQGMQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIRTSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEPVGTTK |
| Phospholipid ABC transporter-binding protein MlaD | C | 201 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | MHHHHHHQHQHENLYFQGMQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIRTSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEPVGTTK |
| Phospholipid ABC transporter-binding protein MlaD | D | 201 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | MHHHHHHQHQHENLYFQGMQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIRTSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEPVGTTK |
| Phospholipid ABC transporter-binding protein MlaD | E | 201 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | MHHHHHHQHQHENLYFQGMQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIRTSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEPVGTTK |
| Phospholipid ABC transporter-binding protein MlaD | F | 201 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | MHHHHHHQHQHENLYFQGMQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIRTSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEPVGTTK |
| Phospholipid ABC transporter permease protein MlaE | G | 260 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLLVRQLYNVGVLSMLIIVVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPVVAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTVIFVAVGIWGGSLVGVSWKGIDSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISLFNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFGN |
| Phospholipid ABC transporter permease protein MlaE | H | 260 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLLVRQLYNVGVLSMLIIVVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPVVAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTVIFVAVGIWGGSLVGVSWKGIDSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISLFNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFGN |
| Phospholipid transport system ATP-binding protein MlaF | I | 269 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWILADKKIVAHGSAQALQANPDPRVRQFLDGIADGPVPFRYPAGDYHADLLPGS |
| Phospholipid transport system ATP-binding protein MlaF | J | 269 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWILADKKIVAHGSAQALQANPDPRVRQFLDGIADGPVPFRYPAGDYHADLLPGS |
| Phospholipid ABC transporter-binding protein MlaB | K | 97 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDLSRVSRVDTGGLALLLHLIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR |
| Phospholipid ABC transporter-binding protein MlaB | L | 97 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDLSRVSRVDTGGLALLLHLIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR |
| MSP1D1 | M | 164 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| MSP1D1 | N | 164 | Influenza Virus A/Anhui/1/2013 (H7N9) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-06-05 Deposition Author(s): Bhabha, G. , Coudray, N. , Ekiert, D.C. , Isom, G.L. , Macrae, M.R. , Saiduddin, M.