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FASTA Sequence PDB Format mmCIF Format
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6X98

Cryo-em model of hiv-1 env bg505 sosip.664 in complex with rabbit monoclonal antibody 11b fragment antigen binding variable domain

PDB DOI: 10.2210/pdb6x98/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus

Deposited: 2020-06-02
Deposition Author(s): Cottrell, C.A. , Ozorowski, G. , Ward, A.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.38 Å

6x98
Literature

Cryo-em model of hiv-1 env bg505 sosip.664 in complex with rabbit monoclonal antibody 11b fragment antigen binding variable domain

Cottrell, C.A. , Ozorowski, G. , Ward, A.B.

Primary Citation of Related Structures: 6X98


Proteins
Molecule Chains Sequence Length Organism Sequence
BG505 HIV-1 Env gp120 A 516 Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 HIV-1 Env gp120 C 516 Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 HIV-1 Env gp120 G 516 Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 HIV-1 Env gp41 B 153 Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 HIV-1 Env gp41 D 153 Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 HIV-1 Env gp41 I 153 Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
monoclonal antibody 11B kappa chain L 237 Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus MYRMQLLSCIALSLALVTNSDIVMTQTPSSVSAAVGGTVTINCQASESIYSGLAWYQQKPGQPPKLLIYRASTLTSGVSSRFKGSGSGARFTLTINDLECADAATYYCQSCYDTTIGTYGSWAFGGGTEVVVKGDPVAPSVLIFPPAADQVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTQYNSHKEYTCKVTQGTTSVVQSFNRGDC
monoclonal antibody 11B kappa chain E 237 Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus MYRMQLLSCIALSLALVTNSDIVMTQTPSSVSAAVGGTVTINCQASESIYSGLAWYQQKPGQPPKLLIYRASTLTSGVSSRFKGSGSGARFTLTINDLECADAATYYCQSCYDTTIGTYGSWAFGGGTEVVVKGDPVAPSVLIFPPAADQVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTQYNSHKEYTCKVTQGTTSVVQSFNRGDC
monoclonal antibody 11B kappa chain J 237 Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus MYRMQLLSCIALSLALVTNSDIVMTQTPSSVSAAVGGTVTINCQASESIYSGLAWYQQKPGQPPKLLIYRASTLTSGVSSRFKGSGSGARFTLTINDLECADAATYYCQSCYDTTIGTYGSWAFGGGTEVVVKGDPVAPSVLIFPPAADQVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTQYNSHKEYTCKVTQGTTSVVQSFNRGDC
monoclonal antibody 11B fragment antigen binding heavy chain H 241 Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus MYRMQLLSCIALSLALVTNSQLVESGGGLVKPGGTLTLTCKASGFSLSDSYWMCWVRQAPGKGLEWVACVFTGNGKAYYARWVEGRFTISRSTSLNTATLQMTSLTAADTATYFCARGDYDDPLDGVATLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSSQPVTCNVAHPATNTKVDKTVAPSTC
monoclonal antibody 11B fragment antigen binding heavy chain F 241 Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus MYRMQLLSCIALSLALVTNSQLVESGGGLVKPGGTLTLTCKASGFSLSDSYWMCWVRQAPGKGLEWVACVFTGNGKAYYARWVEGRFTISRSTSLNTATLQMTSLTAADTATYFCARGDYDDPLDGVATLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSSQPVTCNVAHPATNTKVDKTVAPSTC
monoclonal antibody 11B fragment antigen binding heavy chain K 241 Human Immunodeficiency Virus 1 , Oryctolagus Cuniculus MYRMQLLSCIALSLALVTNSQLVESGGGLVKPGGTLTLTCKASGFSLSDSYWMCWVRQAPGKGLEWVACVFTGNGKAYYARWVEGRFTISRSTSLNTATLQMTSLTAADTATYFCARGDYDDPLDGVATLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSSQPVTCNVAHPATNTKVDKTVAPSTC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-06-02
Deposition Author(s): Cottrell, C.A. , Ozorowski, G. , Ward, A.B.