6WDZ
Porcine circovirus 2 rep domain complexed with a single-stranded dna 10-mer comprising the cleavage site
PDB DOI: 10.2210/pdb6wdz/pdb
Classification: REPLICATION/DNA Organism(s): Porcine Circovirus 2 , Synthetic Construct
Deposited: 2020-04-01 Deposition Author(s): Evans Iii, R.L. , Gordon, W.R. , Litzau, L.A. , Nelson, A. , Shi, K. , Tompkins, K.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.03 Å
Porcine circovirus 2 rep domain complexed with a single-stranded dna 10-mer comprising the cleavage site
Evans Iii, R.L. , Gordon, W.R. , Litzau, L.A. , Nelson, A. , Shi, K. , Tompkins, K.
Primary Citation of Related Structures: 6WDZ
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*TP*AP*GP*TP*AP*TP*TP*AP*CP*C)-3') | c | 10 | NA | TAGTATTACC |
| DNA (5'-D(*TP*AP*GP*TP*AP*TP*TP*AP*CP*C)-3') | i | 10 | NA | TAGTATTACC |
| DNA (5'-D(*TP*AP*GP*TP*AP*TP*TP*AP*CP*C)-3') | f | 10 | NA | TAGTATTACC |
| DNA (5'-D(*TP*AP*GP*TP*AP*TP*TP*AP*CP*C)-3') | j | 10 | NA | TAGTATTACC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| ATP-dependent helicase Rep | D | 115 | Porcine Circovirus 2 , Synthetic Construct | PSKKNGRSGPQPHKRWVFTLNNPSEDERKKIRDLPISLFDYFIVGEEGNEEGRTPHLQGFANFVKKQTFNKVKWYLGARCHIEKAKGTDQQNKEFCSKEGNLLMECGAPRSQGQR |
| ATP-dependent helicase Rep | G | 115 | Porcine Circovirus 2 , Synthetic Construct | PSKKNGRSGPQPHKRWVFTLNNPSEDERKKIRDLPISLFDYFIVGEEGNEEGRTPHLQGFANFVKKQTFNKVKWYLGARCHIEKAKGTDQQNKEFCSKEGNLLMECGAPRSQGQR |
| ATP-dependent helicase Rep | A | 115 | Porcine Circovirus 2 , Synthetic Construct | PSKKNGRSGPQPHKRWVFTLNNPSEDERKKIRDLPISLFDYFIVGEEGNEEGRTPHLQGFANFVKKQTFNKVKWYLGARCHIEKAKGTDQQNKEFCSKEGNLLMECGAPRSQGQR |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2020-04-01 Deposition Author(s): Evans Iii, R.L. , Gordon, W.R. , Litzau, L.A. , Nelson, A. , Shi, K. , Tompkins, K.