6WB1
+3 extended hiv-1 reverse transcriptase initiation complex core (intermediate state)
PDB DOI: 10.2210/pdb6wb1/pdb
Classification: VIRAL PROTEIN/RNA Organism(s): Human Immunodeficiency Virus 1 , Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Bh10) , Synthetic Construct
Deposited: 2020-03-26 Deposition Author(s): Chen, D.H. , Jackson, L.N. , Kappel, K. , Larsen, K.P. , Puglisi, E.V. , Zhang, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.7 Å
+3 extended hiv-1 reverse transcriptase initiation complex core (intermediate state)
Chen, D.H. , Jackson, L.N. , Kappel, K. , Larsen, K.P. , Puglisi, E.V. , Zhang, J.
Primary Citation of Related Structures: 6WB1
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HIV-1 viral RNA genome fragment | c | 101 | NA | GACUCUGGUAACUAGAGAUCCCUCAGACCCUUUUAGUCAGUGUGGAAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAGCGAAAGUAAAGCCAGAG |
| tRNA lysine 3 | d | 79 | NA | GCCCGGAUAGCUCAGUCGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCACTG |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| REVERSE TRANSCRIPTASE/RIBONUCLEASE H | A | 562 | Human Immunodeficiency Virus 1 , Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Bh10) , Synthetic Construct | MVPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDICKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTQLQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKIL |
| reverse transcriptase p51 subunit | B | 442 | Human Immunodeficiency Virus 1 , Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Bh10) , Synthetic Construct | MVPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETF |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-03-26 Deposition Author(s): Chen, D.H. , Jackson, L.N. , Kappel, K. , Larsen, K.P. , Puglisi, E.V. , Zhang, J.