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6WAR

Crystal structure of the mers-cov rbd bound by the neutralizing single-domain antibody mers vhh-55

PDB DOI: 10.2210/pdb6war/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088

Deposited: 2020-03-25
Deposition Author(s): Mclellan, J.S. , Torres, G.M. , Wrapp, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.4 Å

6war
Literature

Crystal structure of the mers-cov rbd bound by the neutralizing single-domain antibody mers vhh-55

Mclellan, J.S. , Torres, G.M. , Wrapp, D.

Primary Citation of Related Structures: 6WAR


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein A 231 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 EAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEGSLEVLFQ
Spike protein C 231 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 EAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEGSLEVLFQ
Spike protein E 231 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 EAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEGSLEVLFQ
Spike protein G 231 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 EAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEGSLEVLFQ
Spike protein I 231 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 EAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEGSLEVLFQ
Spike protein K 231 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 EAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEGSLEVLFQ
Spike protein M 231 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 EAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEGSLEVLFQ
Spike protein O 231 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 EAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEGSLEVLFQ
nanobody MERS VHH-55 B 128 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 QVQLQESGGGSVQAGGSLRLSCVASGSIFSINAMDWYRQAPGKQRELVAGITSGGSTNYGDFVKGRFTISRDNAKNTVYLQMDSLKPEDTAVYYCAAEVGGWGPPRPDYWGHGTQVTVSSGSLEVLFQ
nanobody MERS VHH-55 D 128 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 QVQLQESGGGSVQAGGSLRLSCVASGSIFSINAMDWYRQAPGKQRELVAGITSGGSTNYGDFVKGRFTISRDNAKNTVYLQMDSLKPEDTAVYYCAAEVGGWGPPRPDYWGHGTQVTVSSGSLEVLFQ
nanobody MERS VHH-55 F 128 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 QVQLQESGGGSVQAGGSLRLSCVASGSIFSINAMDWYRQAPGKQRELVAGITSGGSTNYGDFVKGRFTISRDNAKNTVYLQMDSLKPEDTAVYYCAAEVGGWGPPRPDYWGHGTQVTVSSGSLEVLFQ
nanobody MERS VHH-55 H 128 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 QVQLQESGGGSVQAGGSLRLSCVASGSIFSINAMDWYRQAPGKQRELVAGITSGGSTNYGDFVKGRFTISRDNAKNTVYLQMDSLKPEDTAVYYCAAEVGGWGPPRPDYWGHGTQVTVSSGSLEVLFQ
nanobody MERS VHH-55 J 128 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 QVQLQESGGGSVQAGGSLRLSCVASGSIFSINAMDWYRQAPGKQRELVAGITSGGSTNYGDFVKGRFTISRDNAKNTVYLQMDSLKPEDTAVYYCAAEVGGWGPPRPDYWGHGTQVTVSSGSLEVLFQ
nanobody MERS VHH-55 L 128 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 QVQLQESGGGSVQAGGSLRLSCVASGSIFSINAMDWYRQAPGKQRELVAGITSGGSTNYGDFVKGRFTISRDNAKNTVYLQMDSLKPEDTAVYYCAAEVGGWGPPRPDYWGHGTQVTVSSGSLEVLFQ
nanobody MERS VHH-55 N 128 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 QVQLQESGGGSVQAGGSLRLSCVASGSIFSINAMDWYRQAPGKQRELVAGITSGGSTNYGDFVKGRFTISRDNAKNTVYLQMDSLKPEDTAVYYCAAEVGGWGPPRPDYWGHGTQVTVSSGSLEVLFQ
nanobody MERS VHH-55 P 128 Klebsiella Phage Phiko2 , Methanothermus Fervidus Dsm 2088 QVQLQESGGGSVQAGGSLRLSCVASGSIFSINAMDWYRQAPGKQRELVAGITSGGSTNYGDFVKGRFTISRDNAKNTVYLQMDSLKPEDTAVYYCAAEVGGWGPPRPDYWGHGTQVTVSSGSLEVLFQ
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-03-25
Deposition Author(s): Mclellan, J.S. , Torres, G.M. , Wrapp, D.