Advanced Search:
6W6P
Multibody refinement of 70s ribosome from enterococcus faecalis
PDB DOI: 10.2210/pdb6w6p/pdb
Classification: RIBOSOME Organism(s): Enterococcus Faecalis Og1Rf
Deposited: 2020-03-17 Deposition Author(s): Jogl, G. , Khayat, R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.9 Å
Multibody refinement of 70s ribosome from enterococcus faecalis
Primary Citation of Related Structures: 6W6P
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23S rRNA | a | 2908 | NA | UUAAGUGAAUAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACUAACACCGAUAUGCUUUGGGGAGCUGUAAGUAAGCUAUGAUCCAGAGAUUUCCGAAUGGGGGAACCCAAUAUCUUUUAUAGGAUAUUACUUUUCAGUGAAUACAUAGCUGAUUAGAGGUAGACGCAGAGAACUGAAACAUCUUAGUACCUGCAGGAAGAGAAAGAAAAUUCGAUUCCCUGAGUAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCUUGCUUGUUGGGGUUGUAGGACUCCGAUAUGGUAGUCUGUUAGUAUAGUUGAAGGAUUUGGAAAAUUCCGCUAAAGAGGGUGAAAGCCCCGUAGACGAAAUGCUGACAACACCUAGGAGGAUCCUGAGUACGGCGGAACACGAGAAAUUCCGUCGGAAUCCGCGGGGACCAUCCCGCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAUAGAUCCUGAAACCGUGUGCCUACAACAAGUCAAAGCUCGUUAAUGAGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUUGCAUGCGAGGUUAAGUCGAAGAGACGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGAAUGAGUAUGUAGUCGUAGACCCGAAACCAUGUGAUCUACCCAUGUCCAGGUUGAAGGUGCGGUAAAACGCACUGGAGGACCGAACCCACGUACGUUGAAAAGUGCGGGGAUGAGGUGUGGGUAGCGGAGAAAUUCCAAACGAACUUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCGGAAUUGAGAAUGAUGGAGGUAGAGCACUGUUUGGACUAGGGGCCCAUCUCGGGUUACCGAAUUCAGAUAAACUCCGAAUGCCAUUCAUUUAUAUCCGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCACCAGCUAAGGUCCCAAAAUAUAUGUUAAGUGGAAAAGGAUGUGGGGUUGCACAGACAACUAGGAUGUUGGCUUAGAAGCAGCCACCAUUUAAAGAGUGCGUAAUAGCUCACUAGUCGAGUGACCCUGCGCCGAAAAUGUACCGGGGCUAAACAUAUUACCGAAGCUGUGGACUACACCAUUAGGUGUAGUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGGUCGAUCGUGAGGACGGCUGGAGCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGACAGGUGAGAAUCCUGUCCACCGUAUGACUAAGGUUUCCUGGGGAAGGCUCGUCCGCCCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAUAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACCAGUUGUUUUUGUUUGAGCAAUGGAGGGACGCAGUAGGCUAAGGAAUGCAUGCGAUUGGAAGUGCAUGUCCAAGCAAUGAGUCUUGAGUAGAGUUAAAUGCUUUACUCUUUAAGGACAAGUUGUGACGGGGAGCGAAAUAAUAGUAGCGAAGUUCCUGACGUCACACUGCCAAGAAAAGCUUCUAGUGAGAAAACAACUGCCCGUACCGUAAACCGACACAGGUAGUCGAGGAGAGUAUCCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUGACUUCGGUCAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCAAAAUCGUAAGAUGAAGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAUGGGUUAGCUUCGGCGAAGCUCAGAAUUGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAACGAUUUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUUUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCAUGGAGCUUUACUGUAGUUUGAUAUUGAGUGUUUGUACCACAUGUACAGGAUAGGUAGGAGCCGAUGAGACCGGAACGCUAGUUUCGGAGGAGGCGCUGGUGGGAUACUACCCUUGUGUUAUGAACCCUCUAACCCGCACCACUAAUCGUGGUGGGAGACAGUGUCAGAUGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGGUUGGAAAUCAUUCGAAGAGUGUAAAGGCAGAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCUGGGGAUAACAGGCUUAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGUUGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACUUACCGCUGGUGUACCAGUUGUUCUGCCAAGGGCAUUGCUGGGUAGCUAUGUAGGGAAGGGAUAAACGCUGAAAGCAUCUAAGUGUGAAGCCCACCUCAAGAUGAGAUUUCCCAUUUCUUUAAGAAAGUAAGACCCCUGAGAGAUGAUCAGGUAGAUAGGUUGGAAGUGGAAGGCUAGUGAUAGUUGGAGCGGACCAAUACUAAUCGGUCGAGGACUUAAC |
| 5S rRNA | b | 116 | NA | UGUGGUGGCGAUAGCGAGAAGGAUACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUUCUUAGCGCCGAUUGUAGUGAAGGGUUUCCCUUUGUGAGAGUAGGACGUCGCCACGC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L13 | K | 145 | Enterococcus Faecalis Og1Rf | MRTTYMAKAGEVERKWYVVDATDVPLGRLSAVVASVLRGKNKPTFTPHVDTGDFVIVINADKVKLTGKKATDKIYYRHSMYPGGLKSVTAGELRDKNSRRLIETSVKGMLPKNTLGRKQFTKLNVYGGAEHPHAAQQPEVLDITN |
| 50S ribosomal protein L14 | L | 122 | Enterococcus Faecalis Og1Rf | MIQQESRLRVADNSGAREILTIKVLGGSGRKTANIGDVIVATVKQATPGGVVKKGEVVKAVIVRTKSGARRADGSYIKFDENAAVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPEVL |
| 50S ribosomal protein L15 | M | 146 | Enterococcus Faecalis Og1Rf | MKLHELKPAEGSRQVRNRVGRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPKRGFTNINRKDYAVVNLDTLNRFEDGTEVTPVVLKEAGIVKNEKAGIKVLADGELTKKLTVKAAKFSKSAQEAIEAAGGSIEVI |
| 50S ribosomal protein L16 | N | 141 | Enterococcus Faecalis Og1Rf | MLVPKRVKHRREFRGKMRGEAKGGKEVAFGEWGLQATESHWITNRQIEAARIAMTRYMKRGGKVWIKIFPHKSYTSKAIGVRMGKGKGAPEGWVSPVKRGKIMFEIAGVPEEVAREALRLASHKLPVKTKIVKREEMGGES |
| 50S ribosomal protein L17 | O | 124 | Enterococcus Faecalis Og1Rf | YRKLGRTSSQRKAMLRDITTDLIINERIVTTEARAKEVRSTVEKMITLGKRGDLHARRQAATFVRNEVASVREEDESIVVESALQKLFNDLGPRFAERQGGYTRILKTEPRRGDAAPMVVIEFV |
| 50S ribosomal protein L18 | P | 117 | Enterococcus Faecalis Og1Rf | ITKPDKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASASALDKEISGGTKTETAAAVGKLVAERAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLEF |
| 50S ribosomal protein L19 | Q | 114 | Enterococcus Faecalis Og1Rf | NPLIQELTQEQLRTDIPAFRPGDTVRVHAKVVEGTRERIQLFEGVVIKRRGAGISETYTVRKVSNGVGVERTFPLHTPRVAQIEVVRYGKVRRAKLYYLRALHGKAARIKEIRR |
| 50S ribosomal protein L20 | R | 118 | Enterococcus Faecalis Og1Rf | ARVKGGTVTRKRRKKVLKLAKGYYGSKHTLFKSAKEQVMNSYYYAFRDRRQKKRDFRKLWIARINAAARMNGLSYSKLMHGLKLAEIDINRKMLADLAVNDAAAFTALAEQAKDALSK |
| 50S ribosomal protein L21 | S | 102 | Enterococcus Faecalis Og1Rf | MYAIIKTGGKQVKVEVGQAIYVEKLNVEAGEKVVFDEVILVGGESTKVGAPTVAGATVEGTVEKHGKQKKVVTFQYKPKKHSHRKQGHRQPYTKVMIEAINA |
| 50S ribosomal protein L22 | T | 112 | Enterococcus Faecalis Og1Rf | QITSAKATAKTVRTSPRKARLVIDLIRGKSVADAISILKFTPNKSAGIIEKVLMSAVANAENNFDLDVESLVVSEAFVNEGPTMKRFRPRAKGSASPINKRTSHITVVVTEK |
| 50S ribosomal protein L2 | C | 275 | Enterococcus Faecalis Og1Rf | AIKKYKPTTNGRRNMTSSDFAEITTSTPEKSLLQPLKNNAGRNNNGRITVRHQGGGHKRQYRVIDFKRNKDNVAAVVKTIEYDPNRSANIALVHYEDGVKAYILAPKGLEVGMRLVSGPEADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGTSAQVLGKEGKYVLIRLNSGEVRMILATCRATIGSVGNEQHELINIGKAGRSRWMRKRPTVRGSVMNPNDHPHGGGEGKTPIGRKAPVSPWGQPAIGYKTRNKKAKSDKLIVRRRTK |
| 30S ribosomal protein S4 | D | 201 | Enterococcus Faecalis Og1Rf | SRYTGPSWKVSRRLGISLSGTGKELARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRHMYGMNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHGHITVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVEATVGRPAFVSFDTEKLEGSFTRLPERDELYPEIDEALVVEYYNQK |
| 30S ribosomal protein S5 | E | 163 | Enterococcus Faecalis Og1Rf | YIDPKHLELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLVEVPMVGSTIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGVADITSKSLGSNTPINVVRATVEGLKQLKRAEEVAALRGKSVEEII |
| 30S ribosomal protein S6 | F | 97 | Enterococcus Faecalis Og1Rf | QDTKYEIMYIIRPNIDEEAKTALVERFDTILKDNGAEVIESKDWEKRRLAYEMNGFREGIYHIVNVTSPSTAGAINEFDRLAKINDDIIRHMIVKVE |
| 30S ribosomal protein S7 | G | 154 | Enterococcus Faecalis Og1Rf | PRKGPVAKRDVLPDPIYNSKLVTRLINRVMVDGKRGIAANIIYNSFDIIKESTGNDPLEVFEQAMKNVMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWVVNYARLRGEHTMEERLAKEIMDAANNTGASVKKREDTHKMADANRAFAHYR |
| 50S ribosomal protein L23 | U | 89 | Enterococcus Faecalis Og1Rf | ELLDVIKRPVITEKSMLAMDEKKYTFEVDTRANKTLVKQAVESAFDVKVANVNILNVRPKFKRMGKYAGYTKKRRKAIVTLTEDSKEIQ |
| 50S ribosomal protein L24 | V | 101 | Enterococcus Faecalis Og1Rf | MFVKKGDKVKVITGKDKNKEGVVLAAFPKQDKVIVEGVNVVKKHQKPNQAAPQGGILEVEAPIHVSNVMVIDPSNGEATKVAFKEVDGKKVRVSKKTGEVL |
| 50S ribosomal protein L27 | X | 76 | Enterococcus Faecalis Og1Rf | STSNGRDSESKRLGAKSADGQTVTGGSILYRQRGTKIYPGVNVGIGGDDTLFAKVDGVVRFERKGRDKKQVSVYPV |
| 50S ribosomal protein L28 | Y | 54 | Enterococcus Faecalis Og1Rf | AKVCYFTGRKTSSGNNRSHAMNSTKRTVKPNLQKVRVLIDGKPKKVWVSARALK |
| 50S ribosomal protein L29 | Z | 61 | Enterococcus Faecalis Og1Rf | KVKEIRELTTAEMLDKEKQLKEELFNLRFQLATGQLENTARIKEVRQSIARIKTVLREQAN |
| 50S ribosomal protein L30 | 0 | 58 | Enterococcus Faecalis Og1Rf | AELKITLKRSVIGRPQNQRATVKALGLGKVNSTVTKPANEAIKGMVNTISHLVDVEEV |
| 50S ribosomal protein L32 | 2 | 56 | Enterococcus Faecalis Og1Rf | AVPARRTSKAKKAKRRTHYKLTIKGLNACSNCGEMKKSHHVCPACGHYDGKDVMSK |
| 50S ribosomal protein L33 | 3 | 49 | Enterococcus Faecalis Og1Rf | MRVNITLECTSCKERNYLTNKNKRNNPDRLEKQKYCPRERKVTLHRETK |
| 50S ribosomal protein L34 | 4 | 44 | Enterococcus Faecalis Og1Rf | MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVISA |
| 50S ribosomal protein L35 | 5 | 64 | Enterococcus Faecalis Og1Rf | PKQKTHRGLAKRVKRTGGGGLKRGRAFTSHRFHGKTKKQRRQLRKASMVAKGDYKRIRQQLARM |
| 50S ribosomal protein L36 | 6 | 38 | Enterococcus Faecalis Og1Rf | MKVRPSVKPMCEHCKVIRRKGRVMVICPANPKHKQRQG |
| 30S ribosomal protein S8 | H | 131 | Enterococcus Faecalis Og1Rf | VMTDPIADFLTRIRNANMVKHETLEVPASKIKRDIAEILKREGFIRDVEYIEDDKQGVIRVFLKYGKNEERVITNLKRISKPGLRAYVKADEVPKVLNGLGIAIISTSEGVITDKEARAKNIGGEVIAYVW |
| 30S ribosomal protein S9 | I | 128 | Enterococcus Faecalis Og1Rf | QVQYSGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLREVINQPFGVTETKGAYDVIVNVNGGGYAGQSGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR |
| 30S ribosomal protein S10 | J | 99 | Enterococcus Faecalis Og1Rf | QKIRIRLKAYEHRILDQSADKIVETAKRTGADVSGPIPLPTERSLYTVIRATHKYKDSREQFEMRTHKRLIDIVNPTPKTVDALMKLDLPSGVNIEIKL |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-03-17 Deposition Author(s): Jogl, G. , Khayat, R.