6W4T
Ape1 y269a phosphorothioate substrate complex with abasic dna
PDB DOI: 10.2210/pdb6w4t/pdb
Classification: LYASE/DNA Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2020-03-11 Deposition Author(s): Freudenthal, B.D. , Hoitsma, N.M.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.77 Å
Ape1 y269a phosphorothioate substrate complex with abasic dna
Freudenthal, B.D. , Hoitsma, N.M.
Primary Citation of Related Structures: 6W4T
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA-(apurinic or apyrimidinic site) lyase | A | 276 | Homo Sapiens , Synthetic Construct | ALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQAPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTAMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL |
| DNA-(apurinic or apyrimidinic site) lyase | B | 276 | Homo Sapiens , Synthetic Construct | ALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQAPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTAMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*(48Z)P*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3') | p | 21 | NA | GCTGATGCGTXCGACGGATCC |
| DNA (5'-D(P*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*(48Z)P*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3') | c | 21 | NA | GCTGATGCGTXCGACGGATCC |
| DNA (5'-D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') | v | 21 | NA | GGATCCGTCGGACGCATCAGC |
| DNA (5'-D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') | f | 21 | NA | GGATCCGTCGGACGCATCAGC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2020-03-11 Deposition Author(s): Freudenthal, B.D. , Hoitsma, N.M.