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FASTA Sequence PDB Format mmCIF Format
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6VPC

Structure of the spcas9 dna adenine base editor - abe8e

PDB DOI: 10.2210/pdb6vpc/pdb

Classification: DNA BINDING PROTEIN/DNA/RNA
Organism(s): Escherichia Coli , Streptococcus Pyogenes , Synthetic Construct

Deposited: 2020-02-03
Deposition Author(s): Doudna, J.A. , Knott, G.J. , Lapinaite, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Literature

Structure of the spcas9 dna adenine base editor - abe8e

Doudna, J.A. , Knott, G.J. , Lapinaite, A.

Primary Citation of Related Structures: 6VPC


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Cas9 (SpCas9) single-guide RNA (sgRNA) a 82 NA GGUUCCACUUUCUUAGACUGAGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUG
DNA target strand (TS) c 50 NA CTAATCGCCCTCAGTCTAAGAAAGTGGAACACGGTCGGAGCCACCGATCG
DNA non-target strand (NTS) d 50 NA CGATCGGTGGCTCCGACCGTGTTCCXCTTTCTTAGACTGAGGGCGATTAG

Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas9 B 1361 Escherichia Coli , Streptococcus Pyogenes , Synthetic Construct KYSIGLAIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDAIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLSQ
t-RNA adenine deaminase A v8e (TadA-8e) E 227 Escherichia Coli , Streptococcus Pyogenes , Synthetic Construct MGSSHHHHHHMKRTADGSEFESPKKKRKVSEVEFSHEYWMRHALTLAKRARDEREVPVGAVLVLNNRVIGEGWNRAIGLHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTFEPCVMCAGAMIHSRIGRVVFGVRNSKRGAAGSLMNVLNYPGMNHRVEITEGILADECAALLCDFYRMPRQVFNAQKKAQSSINSGGSSGGSSGSETPGTSESATPESSGGSSGGS
t-RNA adenine deaminase A v8e (TadA-8e) F 227 Escherichia Coli , Streptococcus Pyogenes , Synthetic Construct MGSSHHHHHHMKRTADGSEFESPKKKRKVSEVEFSHEYWMRHALTLAKRARDEREVPVGAVLVLNNRVIGEGWNRAIGLHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTFEPCVMCAGAMIHSRIGRVVFGVRNSKRGAAGSLMNVLNYPGMNHRVEITEGILADECAALLCDFYRMPRQVFNAQKKAQSSINSGGSSGGSSGSETPGTSESATPESSGGSSGGS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-02-03
Deposition Author(s): Doudna, J.A. , Knott, G.J. , Lapinaite, A.