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FASTA Sequence PDB Format mmCIF Format
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6VOY

Cryo-em structure of htlv-1 instasome

PDB DOI: 10.2210/pdb6voy/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Homo Sapiens , Human T-Cell Leukemia Virus Type I , Saccharolobus Solfataricus (Strain Atcc 35092 / Dsm 1617 / Jcm 11322 / P2) , Synthetic Construct

Deposited: 2020-02-01
Deposition Author(s): Aihara, H. , Bhatt, V. , Shi, K. , Sundborger, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

6voy
Literature

Cryo-em structure of htlv-1 instasome

Aihara, H. , Bhatt, V. , Shi, K. , Sundborger, A.

Primary Citation of Related Structures: 6VOY


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-binding protein 7d A 390 Homo Sapiens , Human T-Cell Leukemia Virus Type I , Saccharolobus Solfataricus (Strain Atcc 35092 / Dsm 1617 / Jcm 11322 / P2) , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVARVGKMISFTYDEGGGKTGEGAVSEKDAPKELLQMLEKQKKGGSLEVLFQGPSPAELHSFTHCGQTALTLQGATTTEASNILRSCHACRKNNPQHQMPRGHIRRGLLPNHIWQGDITHFKYKNTLYRLHVWVDTFSGAISATQKRKETSSEAISSLLQAIAYLGKPSYINTDNGPAYISQDFLNMCTSLAIRHTTHVPYNPTSSGLVQRSNGILKTLLYKYFTDKPDLPMDNALSIALWTINHLNVLTNCHKTRWQLHHSPRLQPIPETRSLSNKQTHWYYFKLPGLNSRQWKGPQEALQEAAGAALIPVSASSAQWIPWRLLKRAACPRPVGGPADPKEKDHQHHG
DNA-binding protein 7d B 390 Homo Sapiens , Human T-Cell Leukemia Virus Type I , Saccharolobus Solfataricus (Strain Atcc 35092 / Dsm 1617 / Jcm 11322 / P2) , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVARVGKMISFTYDEGGGKTGEGAVSEKDAPKELLQMLEKQKKGGSLEVLFQGPSPAELHSFTHCGQTALTLQGATTTEASNILRSCHACRKNNPQHQMPRGHIRRGLLPNHIWQGDITHFKYKNTLYRLHVWVDTFSGAISATQKRKETSSEAISSLLQAIAYLGKPSYINTDNGPAYISQDFLNMCTSLAIRHTTHVPYNPTSSGLVQRSNGILKTLLYKYFTDKPDLPMDNALSIALWTINHLNVLTNCHKTRWQLHHSPRLQPIPETRSLSNKQTHWYYFKLPGLNSRQWKGPQEALQEAAGAALIPVSASSAQWIPWRLLKRAACPRPVGGPADPKEKDHQHHG
DNA-binding protein 7d C 390 Homo Sapiens , Human T-Cell Leukemia Virus Type I , Saccharolobus Solfataricus (Strain Atcc 35092 / Dsm 1617 / Jcm 11322 / P2) , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVARVGKMISFTYDEGGGKTGEGAVSEKDAPKELLQMLEKQKKGGSLEVLFQGPSPAELHSFTHCGQTALTLQGATTTEASNILRSCHACRKNNPQHQMPRGHIRRGLLPNHIWQGDITHFKYKNTLYRLHVWVDTFSGAISATQKRKETSSEAISSLLQAIAYLGKPSYINTDNGPAYISQDFLNMCTSLAIRHTTHVPYNPTSSGLVQRSNGILKTLLYKYFTDKPDLPMDNALSIALWTINHLNVLTNCHKTRWQLHHSPRLQPIPETRSLSNKQTHWYYFKLPGLNSRQWKGPQEALQEAAGAALIPVSASSAQWIPWRLLKRAACPRPVGGPADPKEKDHQHHG
DNA-binding protein 7d D 390 Homo Sapiens , Human T-Cell Leukemia Virus Type I , Saccharolobus Solfataricus (Strain Atcc 35092 / Dsm 1617 / Jcm 11322 / P2) , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVARVGKMISFTYDEGGGKTGEGAVSEKDAPKELLQMLEKQKKGGSLEVLFQGPSPAELHSFTHCGQTALTLQGATTTEASNILRSCHACRKNNPQHQMPRGHIRRGLLPNHIWQGDITHFKYKNTLYRLHVWVDTFSGAISATQKRKETSSEAISSLLQAIAYLGKPSYINTDNGPAYISQDFLNMCTSLAIRHTTHVPYNPTSSGLVQRSNGILKTLLYKYFTDKPDLPMDNALSIALWTINHLNVLTNCHKTRWQLHHSPRLQPIPETRSLSNKQTHWYYFKLPGLNSRQWKGPQEALQEAAGAALIPVSASSAQWIPWRLLKRAACPRPVGGPADPKEKDHQHHG
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform E 343 Homo Sapiens , Human T-Cell Leukemia Virus Type I , Saccharolobus Solfataricus (Strain Atcc 35092 / Dsm 1617 / Jcm 11322 / P2) , Synthetic Construct IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform F 343 Homo Sapiens , Human T-Cell Leukemia Virus Type I , Saccharolobus Solfataricus (Strain Atcc 35092 / Dsm 1617 / Jcm 11322 / P2) , Synthetic Construct IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3') i 49 NA CCAGGAGAGAAATTTAGTACACAGATATCCACCCTAGTCAAGTGTGTCC
DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3') l 49 NA CCAGGAGAGAAATTTAGTACACAGATATCCACCCTAGTCAAGTGTGTCC
DNA (25-MER) j 25 NA ACTGTGTACTAAATTTCTCTCCTGG
DNA (25-MER) m 25 NA ACTGTGTACTAAATTTCTCTCCTGG
DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3') k 20 NA GGACACACTTGACTAGGGTG
DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3') n 20 NA GGACACACTTGACTAGGGTG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-02-01
Deposition Author(s): Aihara, H. , Bhatt, V. , Shi, K. , Sundborger, A.