6VDD
Pol domain of pol1 from m. smegmatis complex with dna primer-template and dntp
PDB DOI: 10.2210/pdb6vdd/pdb
Classification: TRANSFERASE/DNA Organism(s): Mycolicibacterium Smegmatis , Synthetic Construct
Deposited: 2019-12-24 Deposition Author(s): Ghosh, S. , Goldgur, Y. , Shuman, S.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.9 Å
Pol domain of pol1 from m. smegmatis complex with dna primer-template and dntp
Ghosh, S. , Goldgur, Y. , Shuman, S.
Primary Citation of Related Structures: 6VDD
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA polymerase I | A | 605 | Mycolicibacterium Smegmatis , Synthetic Construct | FETLVAVEPEVEHGFDVRGRALEPGELAAWLSEHSLGSRFGVAVVGTHKAYDADATALAIVAADGDGRYIDTSTLTPEDEAALASWLADPGPPKALHEAKLAMHDLAGRGWTLRGVTSDTALAAYLVRPGQRSFTLDDLAVRYLHRELRAETPEQQQLSLLDDSDGVDEQAVQTVILRACAVLDLADALDQELARIDSLSLLSRMELPVQRTLAEMEHAGIAVDLGMLEQLQSEFADQIRDAAEAAYSVIGKQINLGSPKQLQAVLFDELEMPKTKKTKTGYTTDADALQSLFEKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPIDEVTPELRRRVKAMSYGLAYGLSAYGLAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVDQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELEQLVREHMGNAYPLDVPLEVSVGYGRSWDAAAH |
| DNA polymerase I | D | 605 | Mycolicibacterium Smegmatis , Synthetic Construct | FETLVAVEPEVEHGFDVRGRALEPGELAAWLSEHSLGSRFGVAVVGTHKAYDADATALAIVAADGDGRYIDTSTLTPEDEAALASWLADPGPPKALHEAKLAMHDLAGRGWTLRGVTSDTALAAYLVRPGQRSFTLDDLAVRYLHRELRAETPEQQQLSLLDDSDGVDEQAVQTVILRACAVLDLADALDQELARIDSLSLLSRMELPVQRTLAEMEHAGIAVDLGMLEQLQSEFADQIRDAAEAAYSVIGKQINLGSPKQLQAVLFDELEMPKTKKTKTGYTTDADALQSLFEKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPIDEVTPELRRRVKAMSYGLAYGLSAYGLAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVDQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELEQLVREHMGNAYPLDVPLEVSVGYGRSWDAAAH |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*A*(DCT))-3') | b | 11 | NA | GCGATCACGTA |
| DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*A*(DCT))-3') | e | 11 | NA | GCGATCACGTA |
| DNA (5'-D(P*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3') | c | 14 | NA | CGTACGTGATCGCA |
| DNA (5'-D(P*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3') | f | 16 | NA | GACGTACGTGATCGCA |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2019-12-24 Deposition Author(s): Ghosh, S. , Goldgur, Y. , Shuman, S.