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6VBQ

Crystal structure of anti-hiv-1 antibody dh822 bound to gp120 v2 peptide

PDB DOI: 10.2210/pdb6vbq/pdb

Classification: IMMUNE SYSTEM/Viral Protein
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2019-12-19
Deposition Author(s): Janus, B.M. , Ofek, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.116 Å

Literature

Crystal structure of anti-hiv-1 antibody dh822 bound to gp120 v2 peptide

Janus, B.M. , Ofek, G.

Primary Citation of Related Structures: 6VBQ


Proteins
Molecule Chains Sequence Length Organism Sequence
DH822 heavy chain H 230 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) QVQLVQSGAEVKKPGASVKLSCKASGYTFTDYYIHWVRQAPGQGLEWMGIINPRRDTTTYAQKFQGRVTMTRDTSTNTVYMELSSLRSDDTAVYFCAKNVGFCNSDSCYVGMDVWGPGTTVTISSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
DH822 heavy chain A 230 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) QVQLVQSGAEVKKPGASVKLSCKASGYTFTDYYIHWVRQAPGQGLEWMGIINPRRDTTTYAQKFQGRVTMTRDTSTNTVYMELSSLRSDDTAVYFCAKNVGFCNSDSCYVGMDVWGPGTTVTISSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
DH822 heavy chain E 230 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) QVQLVQSGAEVKKPGASVKLSCKASGYTFTDYYIHWVRQAPGQGLEWMGIINPRRDTTTYAQKFQGRVTMTRDTSTNTVYMELSSLRSDDTAVYFCAKNVGFCNSDSCYVGMDVWGPGTTVTISSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
DH822 heavy chain C 230 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) QVQLVQSGAEVKKPGASVKLSCKASGYTFTDYYIHWVRQAPGQGLEWMGIINPRRDTTTYAQKFQGRVTMTRDTSTNTVYMELSSLRSDDTAVYFCAKNVGFCNSDSCYVGMDVWGPGTTVTISSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
DH822 light chain L 214 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SYELTQPPSMSVSPGQTARITCSADVLPKQYAYWYQQKPGQAPLLLIYKDTERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSTDSSDIYLVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
DH822 light chain B 214 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SYELTQPPSMSVSPGQTARITCSADVLPKQYAYWYQQKPGQAPLLLIYKDTERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSTDSSDIYLVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
DH822 light chain F 214 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SYELTQPPSMSVSPGQTARITCSADVLPKQYAYWYQQKPGQAPLLLIYKDTERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSTDSSDIYLVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
DH822 light chain D 214 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SYELTQPPSMSVSPGQTARITCSADVLPKQYAYWYQQKPGQAPLLLIYKDTERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSTDSSDIYLVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Envelope glycoprotein gp160 J 22 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) LRDKKQKVHALFYKLDIVPIED
Envelope glycoprotein gp160 P 22 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) LRDKKQKVHALFYKLDIVPIED
Envelope glycoprotein gp160 I 22 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) LRDKKQKVHALFYKLDIVPIED
Envelope glycoprotein gp160 K 22 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) LRDKKQKVHALFYKLDIVPIED
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-12-19
Deposition Author(s): Janus, B.M. , Ofek, G.