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FASTA Sequence PDB Format mmCIF Format
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6V3K

Structure of hiv cleaved synaptic complex (csc) intasome bound with magnesium and insti xz419 (compound 4c)

PDB DOI: 10.2210/pdb6v3k/pdb

Classification: VIRAL PROTEIN/DNA
Organism(s): Human Immunodeficiency Virus 1 , Saccharolobus Solfataricus (Strain Atcc 35092 / Dsm 1617 / Jcm 11322 / P2)

Deposited: 2019-11-25
Deposition Author(s): Jozwik, I.K. , Lyumkis, D. , Passos, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

6v3k
Literature

Structure of hiv cleaved synaptic complex (csc) intasome bound with magnesium and insti xz419 (compound 4c)

Jozwik, I.K. , Lyumkis, D. , Passos, D.

Primary Citation of Related Structures: 6V3K


Proteins
Molecule Chains Sequence Length Organism Sequence
Chimeric Sso7d and HIV-1 integrase A 383 Human Immunodeficiency Virus 1 , Saccharolobus Solfataricus (Strain Atcc 35092 / Dsm 1617 / Jcm 11322 / P2) MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKKGGGGGGGGGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
Chimeric Sso7d and HIV-1 integrase B 383 Human Immunodeficiency Virus 1 , Saccharolobus Solfataricus (Strain Atcc 35092 / Dsm 1617 / Jcm 11322 / P2) MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKKGGGGGGGGGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
Chimeric Sso7d and HIV-1 integrase C 383 Human Immunodeficiency Virus 1 , Saccharolobus Solfataricus (Strain Atcc 35092 / Dsm 1617 / Jcm 11322 / P2) MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKKGGGGGGGGGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
Chimeric Sso7d and HIV-1 integrase D 383 Human Immunodeficiency Virus 1 , Saccharolobus Solfataricus (Strain Atcc 35092 / Dsm 1617 / Jcm 11322 / P2) MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKKGGGGGGGGGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
viral DNA non-transferred strand e 27 NA ACTGCTAGAGATTTTCCCGCCCACGCT
viral DNA transferred strand f 25 NA AGCGTGGGCGGGAAAATCTCTAGCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-11-25
Deposition Author(s): Jozwik, I.K. , Lyumkis, D. , Passos, D.