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6V3E

Cryo-em structure of the acinetobacter baumannii ribosome: 30s subunit

PDB DOI: 10.2210/pdb6v3e/pdb

Classification: RIBOSOME
Organism(s): Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus

Deposited: 2019-11-25
Deposition Author(s): Morgan, C.E. , Yu, E.W.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.4 Å

Literature

Cryo-em structure of the acinetobacter baumannii ribosome: 30s subunit

Morgan, C.E. , Yu, E.W.

Primary Citation of Related Structures: 6V3E


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
16s Ribosomal RNA sn1 1544 NA UUUAACUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGGGGGAAGGUAGCUUGCUACCGGACCUAGCGGCGGACGGGUGAGUAAUGCUUAGGAAUCUGCCUAUUAGUGGGGGACAACAUCUCGAAAGGGAUGCUAAUACCGCAUACGUCCUACGGGAGAAAGCAGGGGAUCUUCGGACCUUGCGCUAAUAGAUGAGCCUAAGUCGGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCUGUAGCGGGUCUGAGAGGAUGAUCCGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGGAACCCUGAUCCAGCCAUGCCGCGUGUGUGAAGAAGGCCUUAUGGUUGUAAAGCACUUUAAGCGAGGAGGAGGCUACUCUAGUUAAUACCUAGGGAUAGUGGACGUUACUCGCAGAAUAAGCACCGGCUAACUCUGUGCCAGCAGCCGCGGUAAUACAGAGGGUGCGAGCGUUAAUCGGAUUUACUGGGCGUAAAGCGUGCGUAGGCGGCUUAUUAAGUCGGAUGUGAAAUCCCCGAGCUUAACUUGGGAAUUGCAUUCGAUACUGGUGAGCUAGAGUAUGGGAGAGGAUGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGAUGGCGAAGGCAGCCAUCUGGCCUAAUACUGACGCUGAGGUACGAAAGCAUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCAUGCCGUAAACGAUGUCUACUAGCCGUUGGGGCCUUUGAGGCUUUAGUGGCGCAGCUAACGCGAUAAGUAGACCGCCUGGGGAGUACGGUCGCAAGACUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGCCUUGACAUACUAGAAACUUUCCAGAGAUGGAUUGGUGCCUUCGGGAAUCUAGAUACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUUUCCUUACUUGCCAGCAUUUCGGAUGGGAACUUUAAGGAUACUGCCAGUGACAAACUGGAGGAAGGCGGGGACGACGUCAAGUCAUCAUGGCCCUUACGGCCAGGGCUACACACGUGCUACAAUGGUCGGUACAAAGGGUUGCUACACAGCGAUGUGAUGCUAAUCUCAAAAAGCCGAUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGCGGAUCAGAAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUUGUUGCACCAGAAGUAGCUAGCCUAACUGCAAAGAGGGCGGUUACCACGGUGUGGCCGAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUAACGAA

Proteins
Molecule Chains Sequence Length Organism Sequence
30S ribosomal protein S10 J 103 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MSNQRIRIRLKSFDHRLIDQSAQEIVETAKRTGAQVCGPIPMPTRIERFNVLTSPHVNKDARDQYEIRTYKRLIDIVQPTDKTVDALMKLDLAAGVDVQIALG
30S ribosomal protein S11 K 128 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MAKDTRTRKKVTRTVSEGVAHIHASFNNTIVTITDRQGNALAWATSGGQGFRGSRKSTPFAAQVAAEVAGKAALDYGLKNLDVLVKGPGPGRESAVRALGAVGYKINSITDVTPIPHNGCRPPKKRRV
30S ribosomal protein S12 L 124 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MATTNQLIRKGRTTLVEKSKVPALKACPQRRGVCTRVYTTTPKKPNSAMRKVCRVRLTSGFEVSSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDCAGVKDRNQSRSKYGAKRPKK
30S ribosomal protein S13 M 118 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MARIAGVNIPDNKHAVISLTYIFGIGRHTAKNILAAVGITETTKIRELDDAQLDAIRAEVAKVPTEGDLRREISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKPIKK
30S ribosomal protein S14 N 101 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MAKKGMINRELKREKTVAKYAAKRAELKATIANVNASDEERFEAMLKLQALPRNASPVRLRNRCGLTGRPHGYFRKFGLSRNKLRDTVMQGDVPGVVKASW
30S ribosomal protein S15 O 89 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MALTNADRAEIIAKFARAENDTGSPEVQVALLTAQINDLQGHFKAHKHDHHSRRGLIRMVNQRRKLLDYLNGKDHERYTALIGALGLRR
30S ribosomal protein S16 P 101 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MLPMVGAGIIRKNYKAFIMVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNPTAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQAKKATA
30S ribosomal protein S17 Q 85 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MSEKTVRTLTGKVVSDKMDKSIVVLIERRVQHPLYGKSIRRSTKLHAHDENNVAKIGDVVTIKESRPISKTKAWTLVEVVEAAAE
30S ribosomal protein S18 R 75 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MARFYRRRKFCRFTAENVAYIDYKDIDTLKQYITENGKIVPSRITGTKARYQRQLALAIKQARYLSLIPYTDNHK
30S ribosomal protein S19 S 91 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MPRSLKKGPFVDAHLFAKVEAAVASNSRKPIKTWSRRSMILPDFVGLTISVHNGRNHVPVIVTEHMVGHKLGEFAPTRTYRGHGVDKKSKR
30S ribosomal protein S2 B 250 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MADYNVSMRDLLQAGAHFGHQTRFWNPKMRQYIFGARNKIHIINLEHTVPALNDALNFANQLASKKNKVLFVGTKRAASNIIREQAQRAGQPYVDHRWLGGMLTNWKTLRQSINRLKDLQTQSQDGTFAKLTKREALERTREMEKLERSLGGVKNMGGLPDALFVIDVDHEAIAIKEAKNLGIPVIGIVDTNSNPDNVDYVIPGNDDAIRAVTLYASAMADAILAGKEYAQSQANAQAKGDDAAKDASEA
30S ribosomal protein S20 T 88 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MANSAQAKKRARQNVKARKHNASLRSMVRTYIKRTLSAIAGGDYAVATEAYKKAVPVIDRMADKGIIHKNKAARHKSRLNAQVKALAN
30S ribosomal protein S3 C 250 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MGQKVHPIGIRLGVVKRHNANWYANPKQYAEYLLKDLQVREFLTKKLKNAMVSNILIERPSGAAKVTISTARPGIVIGKKGEDIEKLQRELTNIMGVPAQVSINEIDRPDLDARLVAEAIASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYATMRAETTYGTIGVKVWIFRGEILGGMKQVMNPAPAEERPAKRGRGRGEGQERRGRRGDRAADKGE
30S ribosomal protein S4 D 208 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREKQKVRRIYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLVSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIEVDHSKLEGTFKAAPDRSDLPAEINESLIVELYSK
30S ribosomal protein S5 E 165 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MAKVEQNEGLVEKLVAVDRVAKVVKGGRIFSFTALTVVGDGNGRVGFGRGKAREVPAAISKALEAARRNMITVDLAGTTLQHPVNARHGASRVYMQPASEGTGVIAGGAMRAVLEAAGVHNVLAKCYGSTNAANVVNATFKGLRDMTSPEKVAAKRGKSVEEIQG
30S ribosomal protein S6 F 127 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MRHYEIVLLVHPDQSDQVVGMVERYISQIKEADGQIHRLEDWGRRQLAYPINKIHKAHYILMNVECGQSTLDELEELFRYNDAIIRNLIIRREHAITEESLLAKSAEEKRARKAQREEAQQVAQEAE
30S ribosomal protein S7 G 156 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MPRRRVVAAREILPDPKFSSQTIAKFMNHVMQDGKKSIAESIVYGALERVQEKNKVDPVEFFETTLEKVRPMVEVKARRVGGATYQVPMEVRPSRRTALAMRWLVDAAAKRSEKTMALRLAGELLDAAEGKGAAIKKREDVHRMAEANKAFSHYRF
30S ribosomal protein S8 H 131 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MSMQDTVADMLTRVRNAQMAKKQTVSMPSSKLKVAIANVLQQEGYISNVEVAQEETKSTLTITLKYFEGKPVIEMVKRVSRPGLRQYRGKDKLPSVKQGLGIAIVSTSKGIMTDRAARAAGIGGEVIAFVS
30S ribosomal protein S9 I 128 Acinetobacter Baumannii , Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Sp. 263903-1 , Acinetobacter Sp. Anc 5600 , Acinetobacter Venetianus MATNYGTGRRKTATARVFLSAGTGKLVINNRTLEQYFGRETARMVVRQPLELLEATEKYDLYITVKGGGIGGQAGAIRHGITRALIAADETLKPVLRQAGFVTRDAREVERKKLGLRKARKRPQFSKR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-11-25
Deposition Author(s): Morgan, C.E. , Yu, E.W.