PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6URI

Hiv-1 nef in complex with the cd4 cytoplasmic domain and the ap2 clathrin adaptor complex

PDB DOI: 10.2210/pdb6uri/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Rattus Norvegicus

Deposited: 2019-10-23
Deposition Author(s): Jia, X. , Kwon, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3 Å

Literature

Hiv-1 nef in complex with the cd4 cytoplasmic domain and the ap2 clathrin adaptor complex

Jia, X. , Kwon, Y.

Primary Citation of Related Structures: 6URI


Proteins
Molecule Chains Sequence Length Organism Sequence
AP-2 complex subunit alpha A 641 Homo Sapiens , Human Immunodeficiency Virus 1 , Rattus Norvegicus MGSSHHHHHHSQDPMPAVSKGEGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPERESSILAKLKKKKGENLYFQ
AP-2 complex subunit sigma S 142 Homo Sapiens , Human Immunodeficiency Virus 1 , Rattus Norvegicus MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDARHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE
Protein Nef N 186 Homo Sapiens , Human Immunodeficiency Virus 1 , Rattus Norvegicus AGFSMAADGVGAVSRDLEKHGAITSSNTAANNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC
AP-2 complex subunit beta B 615 Homo Sapiens , Human Immunodeficiency Virus 1 , Rattus Norvegicus MGSSHHHHHHSQDPNSSSARLQVDMTDSKYFTTNKKGEISELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKHPNKYESIIATLCGNLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSHGIHRK
AP-2 complex subunit mu M 135 Homo Sapiens , Human Immunodeficiency Virus 1 , Rattus Norvegicus MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQ
cDNA FLJ50658, highly similar to T-cell surface glycoprotein CD4 D 62 Homo Sapiens , Human Immunodeficiency Virus 1 , Rattus Norvegicus GVDGSDEASELACPTPKEDGLAQQQTQLNLRGSGSGCVRCRHRRRQAERMSQIKRLLSEKKT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-10-23
Deposition Author(s): Jia, X. , Kwon, Y.