PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6UPH

Structure of a yeast centromeric nucleosome at 2.7 angstrom resolution

PDB DOI: 10.2210/pdb6uph/pdb

Classification: CELL CYCLE
Organism(s): Canine Parvovirus Type 2 (Isolate Dog/United States/Cpv-B/1978) , Pseudomonas Chlororaphis Subsp. Piscium , Lactococcus Lactis Subsp. Cremoris

Deposited: 2019-10-17
Deposition Author(s): Arthur, C.P. , Ciferri, C. , Dimitrova, Y.N. , Harrison, S.C. , Khin, Y. , Kschonsak, M. , Migl, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

6uph
Literature

Structure of a yeast centromeric nucleosome at 2.7 angstrom resolution

Arthur, C.P. , Ciferri, C. , Dimitrova, Y.N. , Harrison, S.C. , Khin, Y. , Kschonsak, M. , Migl, D.

Primary Citation of Related Structures: 6UPH


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3-like centromeric protein CSE4 A 229 Canine Parvovirus Type 2 (Isolate Dog/United States/Cpv-B/1978) , Pseudomonas Chlororaphis Subsp. Piscium , Lactococcus Lactis Subsp. Cremoris MSSKQQWVSSAIQSDSSGRSLSNVNRLAGDQQSINDRALSLLQRTRATKNLFPRREERRRYESSKSDLDIETDYEDQAGNLEIETENEEEAEMETEVPAPVRTHSYALDRYVRQKRREKQRKQSLKRVEKKYTPSELALYEIRKYQRSTDLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFI
Histone H3-like centromeric protein CSE4 E 229 Canine Parvovirus Type 2 (Isolate Dog/United States/Cpv-B/1978) , Pseudomonas Chlororaphis Subsp. Piscium , Lactococcus Lactis Subsp. Cremoris MSSKQQWVSSAIQSDSSGRSLSNVNRLAGDQQSINDRALSLLQRTRATKNLFPRREERRRYESSKSDLDIETDYEDQAGNLEIETENEEEAEMETEVPAPVRTHSYALDRYVRQKRREKQRKQSLKRVEKKYTPSELALYEIRKYQRSTDLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFI
Histone H4 B 118 Canine Parvovirus Type 2 (Isolate Dog/United States/Cpv-B/1978) , Pseudomonas Chlororaphis Subsp. Piscium , Lactococcus Lactis Subsp. Cremoris HHHHHHENLYFQSNAMSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG
Histone H4 F 118 Canine Parvovirus Type 2 (Isolate Dog/United States/Cpv-B/1978) , Pseudomonas Chlororaphis Subsp. Piscium , Lactococcus Lactis Subsp. Cremoris HHHHHHENLYFQSNAMSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG
Histone H2A C 145 Canine Parvovirus Type 2 (Isolate Dog/United States/Cpv-B/1978) , Pseudomonas Chlororaphis Subsp. Piscium , Lactococcus Lactis Subsp. Cremoris HHHHHHENLYFQSNAMSGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSSKAKASQEL
Histone H2A G 145 Canine Parvovirus Type 2 (Isolate Dog/United States/Cpv-B/1978) , Pseudomonas Chlororaphis Subsp. Piscium , Lactococcus Lactis Subsp. Cremoris HHHHHHENLYFQSNAMSGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSSKAKASQEL
Histone H2B.1 D 147 Canine Parvovirus Type 2 (Isolate Dog/United States/Cpv-B/1978) , Pseudomonas Chlororaphis Subsp. Piscium , Lactococcus Lactis Subsp. Cremoris HHHHHHENLYFQSNAMSAKASKAPASKAPAEKKPAAKKTSSSTDPSKKRTKARKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATESSKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQA
Histone H2B.1 H 147 Canine Parvovirus Type 2 (Isolate Dog/United States/Cpv-B/1978) , Pseudomonas Chlororaphis Subsp. Piscium , Lactococcus Lactis Subsp. Cremoris HHHHHHENLYFQSNAMSAKASKAPASKAPAEKKPAAKKTSSSTDPSKKRTKARKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATESSKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (119-MER) i 147 NA ATCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT
DNA (119-MER) j 147 NA ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-10-17
Deposition Author(s): Arthur, C.P. , Ciferri, C. , Dimitrova, Y.N. , Harrison, S.C. , Khin, Y. , Kschonsak, M. , Migl, D.