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FASTA Sequence PDB Format mmCIF Format
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6UH5

Structural basis of compass ecm recognition of the h2bub nucleosome

PDB DOI: 10.2210/pdb6uh5/pdb

Classification: TRANSFERASE/STRUCTURAL PROTEIN/DNA
Organism(s): Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct

Deposited: 2019-09-26
Deposition Author(s): Hsu, P.L. , Shi, H. , Zheng, N.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

6uh5
Literature

Structural basis of compass ecm recognition of the h2bub nucleosome

Hsu, P.L. , Shi, H. , Zheng, N.

Primary Citation of Related Structures: 6UH5


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 A 135 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCGIHAKRVTIMPKDIQLARRIRGERA
Histone H3 E 135 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCGIHAKRVTIMPKDIQLARRIRGERA
Swd1 N 439 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MANLLLQDPFGVLKEYPEKLTHTLEVPVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPIAMLGTHSGAHTRSVQSVCWSNDGRYLWSSGRDWYAKLWDMTQPTKCFQQYKFDGPLWSCHVVRWNVCIVTVVEEPTAYVLTLTDRQNAFHCFPLLEQDQDISGHGYTLVACPHPTIESIIITGTSKGWINAFQLDLESGFEDKIRCCYEEKIANANIKQIIISPSGTRIAINGSDRTIRQYQLIVEDNESEGGSSHSVSIELEHKYQDIINRLQWNTIFFSNHSGEYLVASAHGSSAHDLYLWETSSGSLVRVLEGADEELLDIDWNFYSMRIASNGFESGWVYMWSIVIPPKWSALAPDFEEVEENIDYQEKENEFDIMDDDNNLQAMTEAEEIAIDLCTPEKYDVRGNDISMPSFVIPIDYEGVIIQQHWAHQEQ
Ubiquitin Q 76 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGC
H3 N-terminus R 8 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct ARTMQTAR
Spp1 X 342 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MSLPSWCPRYDSRKHDPKTGEEVYCICKKPDTGELMVGCDGCDDWFHFSCLKIPEKYRDLVFSFYCSYCSAGITGPALINGGKLPKTLWKRKCRLPECYTECDANSRSKYCSKKHAVQYVQSIVDKLNLPGVDKIALLRQLLNETTSLEEFKTLGRDKLPEVTSPLSKDQYSKLLENDQHLNKLINEHDELVSVKLSKLNEEDAVIEKYVNWIGEVNERLSPHFNQPTGRKKSKSASKVTICGYHNEFTIPRSVEEFLDKLLQLKEDENSNITSVDGVCVKTKCAKHQDWITLSQNDLSEQKDSLENVKRRLDLLISVRTNQLRISFFEQEMSNRVLPGVKT
Bre2 L 405 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MSVPVIPYLDYDIVDLGSDIKKPDFPQLSESHRINEQQYYITEDTPLNKRNFMYQPCAANLMLDKLKYCGTDYFDKSSINLMDRSDKLAFSLDDHSVSVSENCGWRSVRSDVCMKEGKIYWEVEVKNVSDTSHIRCGISRREASTETPVGCDFYGYSIRDKGLQVIHEGRLHTVLKPHEMQAGDRIGFLLTLPSLQSQSEQAMDYSLKRIQELNNDDSRTNKRNKKFNKEFYKFLLRSCEPTNVVRDQIAIRYKNQLFYESTDYVKTTKPEYYDNRDDMQKFYELENSSFEVFVNGVSHGIAFEGLTPFLPPFSELQYNEKFYLHHWNKRNVTKGIEIRNKYVNNNRLGYYATLSSFQGGTASIITEAMELKFLPKDVDIKTLNDIYNEQIASDIVWDLIDEIDT
Sdc1 O 134 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MSEPVMENMAPEDVVKLEKEEHIVPDIGVSSISTTEPLSPSGIPRESSGTVTSATAATTEREVSPKKELQIDHDRVDPVAMIGGSTTRRYLNEHVTKHLLEGMKLIAREKPEDPLRVLGQFLIDASEMNQKPSS
Sdc1 P 134 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MSEPVMENMAPEDVVKLEKEEHIVPDIGVSSISTTEPLSPSGIPRESSGTVTSATAATTEREVSPKKELQIDHDRVDPVAMIGGSTTRRYLNEHVTKHLLEGMKLIAREKPEDPLRVLGQFLIDASEMNQKPSS
Histone H4 B 102 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 102 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A C 107 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct AKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPK
Histone H2A G 107 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct AKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPK
Histone H2B D 125 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct PEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B H 125 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct PEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTCYTSAK
Swd3 K 327 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MCDLDSVSDLTLTLRMLQFDKQVLPASGKISTSCQISPDGELIAICQNTDMLVYEISSSKMMKLTTTHKECINCLCWSPDSKCIASGSEDFTVEITHIIYGRIRRLMGHTAPVISICYNNKGNILCSSSMDESIKEWHVLSGTALKTMSAHSDAVVSIDIPKFDSSILSSGSYDGLIRIFDTESGHCLKTLTYDKDWIAEDGVVPISTVKFSRNGKFLLVKSLDNVVKLWEYTRGTVVRTFLWPHQETKAKLKYNCGLELIYPQGKDPLVISGNDSGSMCVWNVYSKNLVQKIDEKHRNSPLISISASYDKVATLSLNGECNLFRVH
Histone-lysine N-methyltransferase, H3 lysine-4 specific M 275 Homo Sapiens , Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct YQQIEQNGIIRDNQIALNEKEFDSTLASTTGSFIAEGFKKIPDKLKSSYLLHHRRLAQPLNTVHNHQEQNFMALNGTESTNQEADLEQDNHNASSRLNRVFQRRFQQDIEAQRAAIGFESDLLSLNQLTKRKKPVTFARSAIHNWGLYALEPIAAKEMIIEYVGESIRQPVAEMREKRYIKSGIGSSYLFRIDENTVIDATKRGGIARFINHCCEPSCTAKIIKVDGRKRIVIYALRDIGTNEELTYDYKFERETDEGERLPCLCGAPSCKGFLN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (146-MER) i 146 NA TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT
DNA (146-MER) j 146 NA ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-09-26
Deposition Author(s): Hsu, P.L. , Shi, H. , Zheng, N.