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FASTA Sequence PDB Format mmCIF Format
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6UGM

Structural basis of compass ecm recognition of an unmodified nucleosome

PDB DOI: 10.2210/pdb6ugm/pdb

Classification: TRANSFERASE/STRUCTURAL PROTEIN/DNA
Organism(s): Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct

Deposited: 2019-09-26
Deposition Author(s): Hsu, P.L. , Shi, H. , Zheng, N.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

6ugm
Literature

Structural basis of compass ecm recognition of an unmodified nucleosome

Hsu, P.L. , Shi, H. , Zheng, N.

Primary Citation of Related Structures: 6UGM


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 A 135 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCGIHAKRVTIMPKDIQLARRIRGERA
Histone H3 E 135 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCGIHAKRVTIMPKDIQLARRIRGERA
Swd1 N 439 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MANLLLQDPFGVLKEYPEKLTHTLEVPVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPIAMLGTHSGAHTRSVQSVCWSNDGRYLWSSGRDWYAKLWDMTQPTKCFQQYKFDGPLWSCHVVRWNVCIVTVVEEPTAYVLTLTDRQNAFHCFPLLEQDQDISGHGYTLVACPHPTIESIIITGTSKGWINAFQLDLESGFEDKIRCCYEEKIANANIKQIIISPSGTRIAINGSDRTIRQYQLIVEDNESEGGSSHSVSIELEHKYQDIINRLQWNTIFFSNHSGEYLVASAHGSSAHDLYLWETSSGSLVRVLEGADEELLDIDWNFYSMRIASNGFESGWVYMWSIVIPPKWSALAPDFEEVEENIDYQEKENEFDIMDDDNNLQAMTEAEEIAIDLCTPEKYDVRGNDISMPSFVIPIDYEGVIIQQHWAHQEQ
H3 N-terminus R 3 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct TMQ
Spp1 X 342 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MSLPSWCPRYDSRKHDPKTGEEVYCICKKPDTGELMVGCDGCDDWFHFSCLKIPEKYRDLVFSFYCSYCSAGITGPALINGGKLPKTLWKRKCRLPECYTECDANSRSKYCSKKHAVQYVQSIVDKLNLPGVDKIALLRQLLNETTSLEEFKTLGRDKLPEVTSPLSKDQYSKLLENDQHLNKLINEHDELVSVKLSKLNEEDAVIEKYVNWIGEVNERLSPHFNQPTGRKKSKSASKVTICGYHNEFTIPRSVEEFLDKLLQLKEDENSNITSVDGVCVKTKCAKHQDWITLSQNDLSEQKDSLENVKRRLDLLISVRTNQLRISFFEQEMSNRVLPGVKT
Bre2 L 405 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MSVPVIPYLDYDIVDLGSDIKKPDFPQLSESHRINEQQYYITEDTPLNKRNFMYQPCAANLMLDKLKYCGTDYFDKSSINLMDRSDKLAFSLDDHSVSVSENCGWRSVRSDVCMKEGKIYWEVEVKNVSDTSHIRCGISRREASTETPVGCDFYGYSIRDKGLQVIHEGRLHTVLKPHEMQAGDRIGFLLTLPSLQSQSEQAMDYSLKRIQELNNDDSRTNKRNKKFNKEFYKFLLRSCEPTNVVRDQIAIRYKNQLFYESTDYVKTTKPEYYDNRDDMQKFYELENSSFEVFVNGVSHGIAFEGLTPFLPPFSELQYNEKFYLHHWNKRNVTKGIEIRNKYVNNNRLGYYATLSSFQGGTASIITEAMELKFLPKDVDIKTLNDIYNEQIASDIVWDLIDEIDT
Sdc1 O 134 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MSEPVMENMAPEDVVKLEKEEHIVPDIGVSSISTTEPLSPSGIPRESSGTVTSATAATTEREVSPKKELQIDHDRVDPVAMIGGSTTRRYLNEHVTKHLLEGMKLIAREKPEDPLRVLGQFLIDASEMNQKPSS
Sdc1 P 134 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MSEPVMENMAPEDVVKLEKEEHIVPDIGVSSISTTEPLSPSGIPRESSGTVTSATAATTEREVSPKKELQIDHDRVDPVAMIGGSTTRRYLNEHVTKHLLEGMKLIAREKPEDPLRVLGQFLIDASEMNQKPSS
Histone H4 B 102 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 102 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A C 107 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct AKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPK
Histone H2A G 107 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct AKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPK
Histone H2B D 125 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct PEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 H 125 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct PEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Swd3 K 327 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct MCDLDSVSDLTLTLRMLQFDKQVLPASGKISTSCQISPDGELIAICQNTDMLVYEISSSKMMKLTTTHKECINCLCWSPDSKCIASGSEDFTVEITHIIYGRIRRLMGHTAPVISICYNNKGNILCSSSMDESIKEWHVLSGTALKTMSAHSDAVVSIDIPKFDSSILSSGSYDGLIRIFDTESGHCLKTLTYDKDWIAEDGVVPISTVKFSRNGKFLLVKSLDNVVKLWEYTRGTVVRTFLWPHQETKAKLKYNCGLELIYPQGKDPLVISGNDSGSMCVWNVYSKNLVQKIDEKHRNSPLISISASYDKVATLSLNGECNLFRVH
Histone-lysine N-methyltransferase, H3 lysine-4 specific M 275 Kluyveromyces Lactis (Strain Atcc 8585 / Cbs 2359 / Dsm 70799 / Nbrc 1267 / Nrrl Y-1140 / Wm37) , Xenopus Laevis , Synthetic Construct YQQIEQNGIIRDNQIALNEKEFDSTLASTTGSFIAEGFKKIPDKLKSSYLLHHRRLAQPLNTVHNHQEQNFMALNGTESTNQEADLEQDNHNASSRLNRVFQRRFQQDIEAQRAAIGFESDLLSLNQLTKRKKPVTFARSAIHNWGLYALEPIAAKEMIIEYVGESIRQPVAEMREKRYIKSGIGSSYLFRIDENTVIDATKRGGIARFINHCCEPSCTAKIIKVDGRKRIVIYALRDIGTNEELTYDYKFERETDEGERLPCLCGAPSCKGFLN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (146-MER) i 147 NA CTCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT
DNA (146-MER) j 146 NA ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-09-26
Deposition Author(s): Hsu, P.L. , Shi, H. , Zheng, N.