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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6U5K

Cryoem structure of pyocin r2 - postcontracted - baseplate

PDB DOI: 10.2210/pdb6u5k/pdb

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1)

Deposited: 2019-08-27
Deposition Author(s): Avaylon, J. , Browning, C. , Buth, S.A. , Ding, K. , Ge, P. , Leiman, P.G. , Miller, J.F. , Plattner, M. , Scholl, D. , Shneider, M.M. , Zhou, Z.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

6u5k
Literature

Cryoem structure of pyocin r2 - postcontracted - baseplate

Avaylon, J. , Browning, C. , Buth, S.A. , Ding, K. , Ge, P. , Leiman, P.G. , Miller, J.F. , Plattner, M. , Scholl, D. , Shneider, M.M. , Zhou, Z.H.

Primary Citation of Related Structures: 6U5K


Proteins
Molecule Chains Sequence Length Organism Sequence
Sheath Initiator PA0617 A 108 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIGMDRRSGLPLSGLAHLKQSVEDILTTPLGSRRMRPEYGSKLRRMVDMPVSEGWKSAVQAEVARSLGRWEPRIGLSAVRVVAVVDGRVDLLLSGVFEGENINMEVSA
Sheath Initiator PA0617 B 108 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIGMDRRSGLPLSGLAHLKQSVEDILTTPLGSRRMRPEYGSKLRRMVDMPVSEGWKSAVQAEVARSLGRWEPRIGLSAVRVVAVVDGRVDLLLSGVFEGENINMEVSA
Sheath Initiator PA0617 F 108 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIGMDRRSGLPLSGLAHLKQSVEDILTTPLGSRRMRPEYGSKLRRMVDMPVSEGWKSAVQAEVARSLGRWEPRIGLSAVRVVAVVDGRVDLLLSGVFEGENINMEVSA
Sheath Initiator PA0617 E 108 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIGMDRRSGLPLSGLAHLKQSVEDILTTPLGSRRMRPEYGSKLRRMVDMPVSEGWKSAVQAEVARSLGRWEPRIGLSAVRVVAVVDGRVDLLLSGVFEGENINMEVSA
Sheath Initiator PA0617 D 108 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIGMDRRSGLPLSGLAHLKQSVEDILTTPLGSRRMRPEYGSKLRRMVDMPVSEGWKSAVQAEVARSLGRWEPRIGLSAVRVVAVVDGRVDLLLSGVFEGENINMEVSA
Sheath Initiator PA0617 C 108 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIGMDRRSGLPLSGLAHLKQSVEDILTTPLGSRRMRPEYGSKLRRMVDMPVSEGWKSAVQAEVARSLGRWEPRIGLSAVRVVAVVDGRVDLLLSGVFEGENINMEVSA
Glue PA0627 G 68 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MATTCRTADGDMLDSLCYHVYGHLLGCVEATLDANPGLADEQQPFRAGLLISFPDMPVVNVEQVRLWD
Glue PA0627 H 68 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MATTCRTADGDMLDSLCYHVYGHLLGCVEATLDANPGLADEQQPFRAGLLISFPDMPVVNVEQVRLWD
Glue PA0627 L 68 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MATTCRTADGDMLDSLCYHVYGHLLGCVEATLDANPGLADEQQPFRAGLLISFPDMPVVNVEQVRLWD
Glue PA0627 K 68 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MATTCRTADGDMLDSLCYHVYGHLLGCVEATLDANPGLADEQQPFRAGLLISFPDMPVVNVEQVRLWD
Glue PA0627 J 68 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MATTCRTADGDMLDSLCYHVYGHLLGCVEATLDANPGLADEQQPFRAGLLISFPDMPVVNVEQVRLWD
Glue PA0627 I 68 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MATTCRTADGDMLDSLCYHVYGHLLGCVEATLDANPGLADEQQPFRAGLLISFPDMPVVNVEQVRLWD
Tri1a PA0618 M 295 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE
Tri1a PA0618 N 295 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE
Tri1a PA0618 S 295 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE
Tri1a PA0618 R 295 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE
Tri1a PA0618 Q 295 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE
Tri1a PA0618 P 295 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE
Tri1a PA0618 O 295 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE
Tri1a PA0618 T 295 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE
Tri1a PA0618 X 295 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE
Tri1a PA0618 W 295 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE
Tri1a PA0618 V 295 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE
Tri1a PA0618 U 295 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE
Tri2 PA0619 0 177 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MSSRLLPPNRSSLERSLGDVLPAELPVPLRELHDPARCEAALLPYLAWTRSVDRWDPDWSDEAKRNAVATSFVLHQRKGTLTALRQVVEPIGALSEVTEWWQRSPTGVPGTFEITVDVSDRGIDEGTVLELERLLDDVRPVSRHLTRLDLRITPVIRSRHGLAVTDGDTLEIFPWKQ
Tri2 PA0619 1 177 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MSSRLLPPNRSSLERSLGDVLPAELPVPLRELHDPARCEAALLPYLAWTRSVDRWDPDWSDEAKRNAVATSFVLHQRKGTLTALRQVVEPIGALSEVTEWWQRSPTGVPGTFEITVDVSDRGIDEGTVLELERLLDDVRPVSRHLTRLDLRITPVIRSRHGLAVTDGDTLEIFPWKQ
Tri2 PA0619 5 177 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MSSRLLPPNRSSLERSLGDVLPAELPVPLRELHDPARCEAALLPYLAWTRSVDRWDPDWSDEAKRNAVATSFVLHQRKGTLTALRQVVEPIGALSEVTEWWQRSPTGVPGTFEITVDVSDRGIDEGTVLELERLLDDVRPVSRHLTRLDLRITPVIRSRHGLAVTDGDTLEIFPWKQ
Tri2 PA0619 4 177 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MSSRLLPPNRSSLERSLGDVLPAELPVPLRELHDPARCEAALLPYLAWTRSVDRWDPDWSDEAKRNAVATSFVLHQRKGTLTALRQVVEPIGALSEVTEWWQRSPTGVPGTFEITVDVSDRGIDEGTVLELERLLDDVRPVSRHLTRLDLRITPVIRSRHGLAVTDGDTLEIFPWKQ
Tri2 PA0619 3 177 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MSSRLLPPNRSSLERSLGDVLPAELPVPLRELHDPARCEAALLPYLAWTRSVDRWDPDWSDEAKRNAVATSFVLHQRKGTLTALRQVVEPIGALSEVTEWWQRSPTGVPGTFEITVDVSDRGIDEGTVLELERLLDDVRPVSRHLTRLDLRITPVIRSRHGLAVTDGDTLEIFPWKQ
Tri2 PA0619 2 177 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) MSSRLLPPNRSSLERSLGDVLPAELPVPLRELHDPARCEAALLPYLAWTRSVDRWDPDWSDEAKRNAVATSFVLHQRKGTLTALRQVVEPIGALSEVTEWWQRSPTGVPGTFEITVDVSDRGIDEGTVLELERLLDDVRPVSRHLTRLDLRITPVIRSRHGLAVTDGDTLEIFPWKQ
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-08-27
Deposition Author(s): Avaylon, J. , Browning, C. , Buth, S.A. , Ding, K. , Ge, P. , Leiman, P.G. , Miller, J.F. , Plattner, M. , Scholl, D. , Shneider, M.M. , Zhou, Z.H.