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6TMF

Structure of an archaeal abce1-bound ribosomal post-splitting complex

PDB DOI: 10.2210/pdb6tmf/pdb

Classification: RIBOSOME
Organism(s): Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558

Deposited: 2019-12-04
Deposition Author(s): Becker, T. , Beckmann, R. , Kratzat, H. , Tampe, R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

Literature

Structure of an archaeal abce1-bound ribosomal post-splitting complex

Becker, T. , Beckmann, R. , Kratzat, H. , Tampe, R.

Primary Citation of Related Structures: 6TMF


Proteins
Molecule Chains Sequence Length Organism Sequence
30S ribosomal protein S28e A 66 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 MSDEGYPAEVIEIVARTGVTGGVTQVKVRILEGRDKGRVIRRNVKGPVRVGDIVILRETEREAREI
30S ribosomal protein S8 J 129 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 TLLDPLANALSHITNSERVGKKEVYLKPASKLMGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAREYEAWEKRFLPAFEFGILIVSTSQGVMTHKEAIEKGIGGRLIAYVY
30S ribosomal protein S8e K 126 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 AIWQGRSLKKPSGGRIILARKKRKRELGREPAFTRVGEEKEKKKIIRTYGGNRKVRLIEAIYANVFENGKGRKVKVLGVVENPANRQYVRRDIITKGAIIETEAGRAIVTSRPGQDGVVNAVLIKE
30S ribosomal protein S9 L 132 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 MKVIQTAGKRKTAIARATIREGKGRVRINHRPVEIIEPEIARFTIMEPLVLAGEEIVKGVDIDVKVEGGGFMGQAEAARVAIARALVEWTNDMNLKEKFMKYDRTMLVGDSRRTEPHKPNRSTKGPRAKRQK
30S ribosomal protein S10 M 102 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 MQKARIKLASTDIKALNEVTDQIRQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGTATFDKFELRVHKRLVDIEADERAMRQIMRIRVPEDVTIEIELIS
30S ribosomal protein S11 N 133 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 QVNLKKKEKWGVAHIYSSYNNTIIHITDLTGAETVSRWSGGMVVKADRDEPSPYAAMIAARRAAEEAMEKGFTGVHIKVRAPGGSKSKSPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGTRPKGGRRGRRV
30S ribosomal protein S12 O 144 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 GKKAPYGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR
30S ribosomal protein S13 P 136 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 DEFRHIVRIAGVDLNGNKQLRWALTGIRGIGINFATMVLRVAGIDPYMKTGYLTNEQIKKIEEILEDPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRVRAYRGIRHELGLPLRGQRTRSNFRH
30S ribosomal protein S14 type Z Q 56 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 MAKADYNKRKPRKFGKGARRCVRCGQYGPVIRVHGLMLCRHCFREIAPKLGFKKYE
30S ribosomal protein S15 R 151 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 MARMHARKRGKSGSKRPPRTAPPTWVEYTAEEVEGLVVKLRKEGYSAAMIGTILRDQYGIPSVKLITGKKITKILEENGLAPQIPEDLMALIRKAVNLRKHLEMHPKDRHSMRGLQLTESKIRRLVKYYRRTGKLPAKWRYDPEQAKLLVR
30S ribosomal protein S17 S 111 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 MREIGLKVQPPAEKCDDPHCPWHGHLRIHGRYFEGIVVSDKGKKTVVVERRHYHYLKKYERYELRRSKVHAHNPECIDAKVGDRVLVAETRPISKTKSWVVVAVTKRAGER
50S ribosomal protein L7Ae B 123 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 MAKPSYVKFEVPAELAEKALEAVELARDTGRIRKGTNETTKAVERGQAKLVVIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVPAASVAILEPGKGRELVEDIAAKVRELMK
30S ribosomal protein S17e T 64 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 MGNIKQMFIKRTARELFDRYPNEFSRDFEHNKKKVEELTNVTSKTIRNRIAGYITKLVRMKEEG
30S ribosomal protein S19P U 115 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 EFKYRGYTFEELLNMSLEDFAKLLPSRQRRSLKRGLSPEQKKLLRKIRLARKGKYKKPIRTHSRDMVILPEMVGITIHVYNGKEFVPVEIKEEMIGHYLGEFALTRKVVQHGSPG
30S ribosomal protein S19e V 149 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 ATVYDVPGDLLVERTAKALKEVEAIKPPEWAPFVKTGRHKERIPEQEDWWYYRVASIFRKIYIDGPVGIERLRTWYGGRKNRGHAPEHFYKAGGSIIRKALQQLEAAGFVQKVPGEGRIVTPQGQSFLDRIATELKKELEEQLPELKKY
RNA-binding protein W 56 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 KFEVPVCTSCGKEITPREHATHFVCPNCGEAIIWRCESCRVLSVPYKCPKCGWEGP
30S ribosomal protein S24e X 97 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 MEIKVREMKENRLLGRKEIYFDVIHEGEATPSRADVKGKLVAMLDLNPETVVIQYIRSYFGSRVSRGYAKAYESKERMLYIEPEYVLVRDGIIKKEE
30S ribosomal protein S27e Y 63 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 LPKNLIPMPKSRFLRVKCIDCGNEQIVFSNPSTTVRCLVCGATLVEPTGGKGILKAKVLEVLE
30S ribosomal protein S27ae Z 50 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 MGQKWKLYEVKGGKVRRKNKFCPRCGPGVFMAEHKDRWSCGRCGYTEWKR
30S ribosomal protein S3 C 193 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 MAIERYFIEEGVREMLIDEYLEKELRRAGYSGIDIKKTPLGTKVVIFAASPGYVIGRGGRRIRELTRILERQFGLENPQIEVEEIKNPYLNAKVQAIRLARALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSRGYAQAKLKLGVIGVKVSIMPPDAKLPDEI
30S ribosomal protein S3Ae D 184 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 DKWKMKEWYVVYAPDFFGSKEIGLTPADEPEKVIGRVIETTLRDLTGDFTKGQVKLYFQIYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRIDGIFNVTTKDGYKLRVMGMVIAYRRIQTSQERAIREIIRDIIYKKAEELNYRDFVLEAVSGKMAAEIAKEARRIYPIKRAEIRKIKVLAEP
30S ribosomal protein S4 E 178 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 DPKRQRKKYETPSHPWIKERLDRERVIMRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAEVERVQLLQRLNRLGLLPADAVLDDVLSLTVEDVLDRRLQTIVYKKGLARTPRQARQLIVHGHIEVNGQIIRSPGYLVLKAEEDTITYSKTSPFARESHPERMVIEQAKQGGEA
30S ribosomal protein S4e F 241 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 RKGAKRHLKRLAAPDQWYISRKRYKWAVRPRPGPHSMKTSIPLLYIVRDYLGYAKTAREARKILNEGRILVDGRVRRDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEKEANIKPLRISNKRMVKGAKVQLNLHDGSNHLVTVDDKDNYRTAYTVLMKVPDREVIEILPFDVGAYVFVTRGKNVARKGKIVEVRRFPMGWPDVVTIEDENGELFDTLKEYAFVVGKEKPEISLP
30S ribosomal protein S5 G 220 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 SQRVLEEWEPRTKLGQLVKAGQITDIHEIFRKGYQIKEPEIVDVLLPEVNMRENQEVLDIALTVRMTDSGRRIRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKMNIIEIKRGCGSWECRCRRPHSIPFAVEGKEGSVRVKLMPGPRGLGLVIGDVGKKILSLAGVQDVWSQSLGETRTTVNFAKAVFNALYNTNRVAIQPGMEEKYGIVVGRE
30S ribosomal protein S6e H 125 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 MATFKLVISNPRNGIARQVEISGESAEKLVGKRIGDEIPASELGLNLTEIFGEEIPGDVKLRITGGTDRDGFAMRPDVHGPRRVKILVSRGPGFRPKERGERRKKTVRGNTISPEIVQVNMKLVF
30S ribosomal protein S7 I 214 Saccharolobus Solfataricus , Thermococcus Celer Vu 13 = Jcm 8558 AKALTERFYQPKELKVMGRWSVEDVTVNDPSLRPYINLEARLLPHSHGRHAKKAFGKANVHIVERLINKVMRSGASSHKAGGHFMRREHRSLMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANADPKSFAYSRKEEIERIAQSSR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-12-04
Deposition Author(s): Becker, T. , Beckmann, R. , Kratzat, H. , Tampe, R.