6TMF
Structure of an archaeal abce1-bound ribosomal post-splitting complex
PDB DOI: 10.2210/pdb6tmf/pdb
Classification: RIBOSOME Organism(s): Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida
Deposited: 2019-12-04 Deposition Author(s): Becker, T. , Beckmann, R. , Kratzat, H. , Tampe, R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.8 Å
Structure of an archaeal abce1-bound ribosomal post-splitting complex
Becker, T. , Beckmann, R. , Kratzat, H. , Tampe, R.
Primary Citation of Related Structures: 6TMF
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S28e | A | 66 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | MSDEGYPAEVIEIVARTGVTGGVTQVKVRILEGRDKGRVIRRNVKGPVRVGDIVILRETEREAREI |
| 30S ribosomal protein S8 | J | 129 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | TLLDPLANALSHITNSERVGKKEVYLKPASKLMGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAREYEAWEKRFLPAFEFGILIVSTSQGVMTHKEAIEKGIGGRLIAYVY |
| 30S ribosomal protein S8e | K | 126 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | AIWQGRSLKKPSGGRIILARKKRKRELGREPAFTRVGEEKEKKKIIRTYGGNRKVRLIEAIYANVFENGKGRKVKVLGVVENPANRQYVRRDIITKGAIIETEAGRAIVTSRPGQDGVVNAVLIKE |
| 30S ribosomal protein S9 | L | 132 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | MKVIQTAGKRKTAIARATIREGKGRVRINHRPVEIIEPEIARFTIMEPLVLAGEEIVKGVDIDVKVEGGGFMGQAEAARVAIARALVEWTNDMNLKEKFMKYDRTMLVGDSRRTEPHKPNRSTKGPRAKRQK |
| 30S ribosomal protein S10 | M | 102 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | MQKARIKLASTDIKALNEVTDQIRQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGTATFDKFELRVHKRLVDIEADERAMRQIMRIRVPEDVTIEIELIS |
| 30S ribosomal protein S11 | N | 133 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | QVNLKKKEKWGVAHIYSSYNNTIIHITDLTGAETVSRWSGGMVVKADRDEPSPYAAMIAARRAAEEAMEKGFTGVHIKVRAPGGSKSKSPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGTRPKGGRRGRRV |
| 30S ribosomal protein S12 | O | 144 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | GKKAPYGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR |
| 30S ribosomal protein S13 | P | 136 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | DEFRHIVRIAGVDLNGNKQLRWALTGIRGIGINFATMVLRVAGIDPYMKTGYLTNEQIKKIEEILEDPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRVRAYRGIRHELGLPLRGQRTRSNFRH |
| 30S ribosomal protein S14 type Z | Q | 56 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | MAKADYNKRKPRKFGKGARRCVRCGQYGPVIRVHGLMLCRHCFREIAPKLGFKKYE |
| 30S ribosomal protein S15 | R | 151 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | MARMHARKRGKSGSKRPPRTAPPTWVEYTAEEVEGLVVKLRKEGYSAAMIGTILRDQYGIPSVKLITGKKITKILEENGLAPQIPEDLMALIRKAVNLRKHLEMHPKDRHSMRGLQLTESKIRRLVKYYRRTGKLPAKWRYDPEQAKLLVR |
| 30S ribosomal protein S17 | S | 111 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | MREIGLKVQPPAEKCDDPHCPWHGHLRIHGRYFEGIVVSDKGKKTVVVERRHYHYLKKYERYELRRSKVHAHNPECIDAKVGDRVLVAETRPISKTKSWVVVAVTKRAGER |
| 50S ribosomal protein L7Ae | B | 123 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | MAKPSYVKFEVPAELAEKALEAVELARDTGRIRKGTNETTKAVERGQAKLVVIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVPAASVAILEPGKGRELVEDIAAKVRELMK |
| 30S ribosomal protein S17e | T | 64 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | MGNIKQMFIKRTARELFDRYPNEFSRDFEHNKKKVEELTNVTSKTIRNRIAGYITKLVRMKEEG |
| 30S ribosomal protein S19P | U | 115 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | EFKYRGYTFEELLNMSLEDFAKLLPSRQRRSLKRGLSPEQKKLLRKIRLARKGKYKKPIRTHSRDMVILPEMVGITIHVYNGKEFVPVEIKEEMIGHYLGEFALTRKVVQHGSPG |
| 30S ribosomal protein S19e | V | 149 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | ATVYDVPGDLLVERTAKALKEVEAIKPPEWAPFVKTGRHKERIPEQEDWWYYRVASIFRKIYIDGPVGIERLRTWYGGRKNRGHAPEHFYKAGGSIIRKALQQLEAAGFVQKVPGEGRIVTPQGQSFLDRIATELKKELEEQLPELKKY |
| RNA-binding protein | W | 56 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | KFEVPVCTSCGKEITPREHATHFVCPNCGEAIIWRCESCRVLSVPYKCPKCGWEGP |
| 30S ribosomal protein S24e | X | 97 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | MEIKVREMKENRLLGRKEIYFDVIHEGEATPSRADVKGKLVAMLDLNPETVVIQYIRSYFGSRVSRGYAKAYESKERMLYIEPEYVLVRDGIIKKEE |
| 30S ribosomal protein S27e | Y | 63 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | LPKNLIPMPKSRFLRVKCIDCGNEQIVFSNPSTTVRCLVCGATLVEPTGGKGILKAKVLEVLE |
| 30S ribosomal protein S27ae | Z | 50 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | MGQKWKLYEVKGGKVRRKNKFCPRCGPGVFMAEHKDRWSCGRCGYTEWKR |
| 30S ribosomal protein S3 | C | 193 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | MAIERYFIEEGVREMLIDEYLEKELRRAGYSGIDIKKTPLGTKVVIFAASPGYVIGRGGRRIRELTRILERQFGLENPQIEVEEIKNPYLNAKVQAIRLARALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSRGYAQAKLKLGVIGVKVSIMPPDAKLPDEI |
| 30S ribosomal protein S3Ae | D | 184 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | DKWKMKEWYVVYAPDFFGSKEIGLTPADEPEKVIGRVIETTLRDLTGDFTKGQVKLYFQIYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRIDGIFNVTTKDGYKLRVMGMVIAYRRIQTSQERAIREIIRDIIYKKAEELNYRDFVLEAVSGKMAAEIAKEARRIYPIKRAEIRKIKVLAEP |
| 30S ribosomal protein S4 | E | 178 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | DPKRQRKKYETPSHPWIKERLDRERVIMRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAEVERVQLLQRLNRLGLLPADAVLDDVLSLTVEDVLDRRLQTIVYKKGLARTPRQARQLIVHGHIEVNGQIIRSPGYLVLKAEEDTITYSKTSPFARESHPERMVIEQAKQGGEA |
| 30S ribosomal protein S4e | F | 241 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | RKGAKRHLKRLAAPDQWYISRKRYKWAVRPRPGPHSMKTSIPLLYIVRDYLGYAKTAREARKILNEGRILVDGRVRRDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEKEANIKPLRISNKRMVKGAKVQLNLHDGSNHLVTVDDKDNYRTAYTVLMKVPDREVIEILPFDVGAYVFVTRGKNVARKGKIVEVRRFPMGWPDVVTIEDENGELFDTLKEYAFVVGKEKPEISLP |
| 30S ribosomal protein S5 | G | 220 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | SQRVLEEWEPRTKLGQLVKAGQITDIHEIFRKGYQIKEPEIVDVLLPEVNMRENQEVLDIALTVRMTDSGRRIRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKMNIIEIKRGCGSWECRCRRPHSIPFAVEGKEGSVRVKLMPGPRGLGLVIGDVGKKILSLAGVQDVWSQSLGETRTTVNFAKAVFNALYNTNRVAIQPGMEEKYGIVVGRE |
| 30S ribosomal protein S6e | H | 125 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | MATFKLVISNPRNGIARQVEISGESAEKLVGKRIGDEIPASELGLNLTEIFGEEIPGDVKLRITGGTDRDGFAMRPDVHGPRRVKILVSRGPGFRPKERGERRKKTVRGNTISPEIVQVNMKLVF |
| 30S ribosomal protein S7 | I | 214 | Streptomyces Thermoviolaceus , Photobacterium Damsela Subsp. Piscicida | AKALTERFYQPKELKVMGRWSVEDVTVNDPSLRPYINLEARLLPHSHGRHAKKAFGKANVHIVERLINKVMRSGASSHKAGGHFMRREHRSLMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANADPKSFAYSRKEEIERIAQSSR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-12-04 Deposition Author(s): Becker, T. , Beckmann, R. , Kratzat, H. , Tampe, R.