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FASTA Sequence PDB Format mmCIF Format
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6SZS

Release factor-dependent ribosome rescue by brfa in the gram-positive bacterium bacillus subtilis

PDB DOI: 10.2210/pdb6szs/pdb

Classification: RIBOSOME
Organism(s): Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6)

Deposited: 2019-10-02
Deposition Author(s): Beckert, B. , Muller, C. , Wilson, D.N.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.06 Å

Literature

Release factor-dependent ribosome rescue by brfa in the gram-positive bacterium bacillus subtilis

Beckert, B. , Muller, C. , Wilson, D.N.

Primary Citation of Related Structures: 6SZS


Proteins
Molecule Chains Sequence Length Organism Sequence
50S ribosomal protein L32 0 57 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK
30S ribosomal protein S4 D 206 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK
30S ribosomal protein S5 E 167 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK
30S ribosomal protein S6 F 135 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE
30S ribosomal protein S7 G 179 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRWLSLRSFSHQAGASSKQPALGYLN
30S ribosomal protein S8 H 130 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA
30S ribosomal protein S10 J 103 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG
30S ribosomal protein S11 K 129 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV
30S ribosomal protein S12 L 124 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA
30S ribosomal protein S13 M 118 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK
30S ribosomal protein S14 N 101 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW
50S ribosomal protein L33 1 55 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK
30S ribosomal protein S15 O 89 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLRR
30S ribosomal protein S16 P 82 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA
30S ribosomal protein S17 Q 84 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL
30S ribosomal protein S18 R 75 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRHQ
30S ribosomal protein S19 S 92 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK
30S ribosomal protein S20 T 87 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA
30S ribosomal protein S21 U 71 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY
50S ribosomal protein L27 W 85 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE
50S ribosomal protein L34 2 46 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK
Uncharacterized protein YqkK Y 71 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MAKSQAKKKRGHRLRNGGRDVLLSRGSTPSFSTHGRMTKSKKEILNKRKHKNPYDHTAVDDKDFFVPQKAA
Peptide chain release factor 2 Z 362 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) EIRAELENMASRLADFRGSLDLESKEARIAELDEQMADPEFWNDQQKAQTVINEANGLKDYVNSYKKLNESHEELQMTHDLLKEEPDTDLQLELEKELKSLTKEFNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWGERRGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSCEVMPEFNDEIDIDIRTEDIKVDTYRASGAGGPHVNTTDSAVRITHLPTNVVVTCQTERSQIKNRERAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNTEMGNVQAVMDGDIDTFIDAYLRSKLS
50S ribosomal protein L2 C 273 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK
50S ribosomal protein L35 3 65 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA
30S ribosomal protein S9 I 130 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR
50S ribosomal protein L36 4 38 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG
50S ribosomal protein L31 5 70 Nectria Haematococca Mpvi , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIPGSK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
mRNA v 6 NA CCGCCG
P-site tRNA-Pro(CGG) x 77 NA CGGUGAUUGGCGCAGCCUGGUAGCGCACUUCGUUCGGGACGAAGGGGUCGGAGGUUCGAAUCCUCUAUCACCGACCA
23S ribosomal RNA a 2903 NA GGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGUUUCGACACACUAUCAUUAACUGAAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGGCGAGCGAACGGGGAGCAGCCCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGUGGUAUCCUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGCACGCUUAGGCGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACCGAAUAGGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAUUCAUCUCCGGGGGUAGAGCACUGUUUCGGCAAGGGGGUCAUCCCGACUUACCAACCCGAUGCAAACUGCGAAUACCGGAGAAUGUUAUCACGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACGCUUAUGCGUUGUUGGGUAGGGGAGCGUUCUGUAAGCCUGCGAAGGUGUGCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCGGGUGAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACUGCGAAGGGGGGACGGAGAAGGCUAUGUUGGCCGGGCGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCCGGAAAAUCAAGGCUGAGGCGUGAUGACGAGGCACUACGGUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUAAGCAUCAGGUAACAUCAAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUAUGUAGGUGAGGUCCCUCGCGGAUGGAGCUGAAAUCAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUGAACCUUUACUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACGUUGACCCGUAAUCCGGGUUGCGGACAGUGUCUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGCGUGACGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGUUCUGAAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAUGCCAAUGGCACUGCCCGGUAGCUAAAUGCGGAAGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUCCCUGACCCUUUAAGGGUCCUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGUGUAAGCGCAGCGAUGCGUUGAGCUAACCGGUACUAAUGAACCGUGAGGCUUAACCU
5S ribosomal RNA b 120 NA UGCCUGGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGGAACUGCCAGGCAU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-10-02
Deposition Author(s): Beckert, B. , Muller, C. , Wilson, D.N.