6SWE
Ic2 head of cryo-em structure of a full archaeal ribosomal translation initiation complex devoid of aif1 in p. abyssi
PDB DOI: 10.2210/pdb6swe/pdb
Classification: RIBOSOME Organism(s): Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5
Deposited: 2019-09-20 Deposition Author(s): Coureux, P.-D. , Mechulam, Y. , Schmitt, E.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.1 Å
Ic2 head of cryo-em structure of a full archaeal ribosomal translation initiation complex devoid of aif1 in p. abyssi
Coureux, P.-D. , Mechulam, Y. , Schmitt, E.
Primary Citation of Related Structures: 6SWE
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S ribosomal RNA | 2 | 468 | NA | GUAAGGCGGGGGAGCACUACAAGGGGUGGAGCGUGCGGUUUAAUUGGAUUCAACGCCGGGAACCUCACNGGGGGCGACGGCAGGAUGAAGGCCAGGCUGAAGGUCUUGCCGGACGCGCCGAGAGGAGGUGCAUGGCCGCNGUCAGCUCGGCGUCCACUUAAGUGUGGUAACGAGCGAGACCCGCGCCCCCAGUUGCCAGUCCCUCCCGCUCGGGAGGGAGGCACUCUGGGGGGACUGCCGGCGAUAAGCNGGAGGAAGGGGCGGGCGACGGUAGGUCAGUAUGCCCNGAAACCCCNGGGCUACACGCGCGCUACAAUGGGCGGGACAAUGGGUGCNGACCCNGAAAGGGGGAGGUAAUCCCCUAAACCCGCCCUCAGUUCGGAUCGCGGGCUGCAACUCGCCCGCGUGAAGCUGGAAUCCCUAGUACCCGCGCGUCAUCAUCGCGCGGCGAAUACGUCCCUGCUCCUU |
| initiator Met-tRNA fMet from E. coli (A1U72 variant) | 4 | 18 | NA | GUCGGGCUCAUAACCCGA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S28e | X | 71 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIKSRR |
| 30S ribosomal protein S27ae | Y | 51 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MGQKWKLYIVKDGKVIRKNKFCPRCGPGVFMADHGDRWACGRCGYTEWKKK |
| 30S ribosomal protein S3 | Z | 210 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIMPPDARLPDEIEIIEKPVEEEVSSNEAE |
| 50S ribosomal protein L7Ae | 3 | 123 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVRELMK |
| Translation initiation factor 1A | 6 | 113 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MPKKERKVEGDEVIRVPLPEGNQLFGVVEQALGAGWMDVRCEDGKIRRCRIPGKLRRRVWIRVGDLVIVQPWPVQSDKRGDIVYRYTQTQVDWLLRKGKITQEFLTGGSLLVE |
| 30S ribosomal protein S7 | H | 215 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR |
| 30S ribosomal protein S9 | K | 135 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR |
| 30S ribosomal protein S10 | L | 102 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS |
| 30S ribosomal protein S13 | O | 148 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MADFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKKK |
| 30S ribosomal protein S14 type Z | P | 56 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MAKADYNKRKPRKFGKGARRCIRCGQYGPIIRIHGLMLCRHCFREVAPKLGFRKYE |
| 30S ribosomal protein S17e | S | 67 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MGKIRQGFIKRVARELFNKYPNEFTRDFEHNKKKVEELTNVTSKKIRNRIAGYITKLVRMKEEGKIL |
| 30S ribosomal protein S19 | T | 132 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MARKEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK |
| 30S ribosomal protein S19e | U | 150 | Escherichia Coli , Pyrococcus Abyssi (Strain Ge5 / Orsay) , Pyrococcus Abyssi Ge5 | MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKKELEEIIPELKKY |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-09-20 Deposition Author(s): Coureux, P.-D. , Mechulam, Y. , Schmitt, E.