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6SPG
Pseudomonas aeruginosa 70s ribosome from a clinical isolate
PDB DOI: 10.2210/pdb6spg/pdb
Classification: RIBOSOME Organism(s): Vibrio Nigripulchritudo
Deposited: 2019-09-01 Deposition Author(s): Bashan, A. , Belousoff, M. , Espinos, R. , Eyal, Z. , Halfon, Y. , Jimenez-Fernande, A. , Krogh Johansen, H. , La Ros, R. , Matzov, D. , Molin, S. , Yonath, A. , Zimmerman, E.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.34 Å
Pseudomonas aeruginosa 70s ribosome from a clinical isolate
Bashan, A. , Belousoff, M. , Espinos, R. , Eyal, Z. , Halfon, Y. , Jimenez-Fernande, A. , Krogh Johansen, H. , La Ros, R. , Matzov, D. , Molin, S. , Yonath, A. , Zimmerman, E.
Primary Citation of Related Structures: 6SPG
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23S ribosomal RNA | a | 2888 | NA | GUCAAGUGAAGAAGCGCAUACGGUGGAUGCCUUGGCAGUCAGAGGCGAUGAAAGACGUGGUAGCCUGCGAAAAGCUUCGGGGAGUCGGCAAACAGACUUUGAUCCGGAGAUCUCUGAAUGGGGGAACCCACCUAGGAUAACCUAGGUAUCUUGUACUGAAUCCAUAGGUGCAAGAGGCGAACCAGGGGAACUGAAACAUCUAAGUACCCUGAGGAAAAGAAAUCAACCGAGAUUCCCUUAGUAGUGGCGAGCGAACGGGGAUUAGCCCUUAAGCUUCAUUGAUUUUAGCGGAACGCUCUGGAAAGUGCGGCCAUAGUGGGUGAUAGCCCCGUACGCGAAAGGAUCUUUGAAGUGAAAUCAAGUAGGACGGAGCACGAGAAACUUUGUCUGAACAUGGGGGGACCAUCCUCCAAGGCUAAAUACUACUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGAGAGGGGAGUGAAAUAGAACCUGAAACCGUAUGCGUACAAGCAGUGGGAGCCUACUUGUUAGGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCAGUGGCAAGCUUAACCGUAUAGGGUAGGCGUAGCGAAAGCGAGUCUUAAUAGGGCGUUUAGUCGCUGGGUAUAGACCCGAAACCGGGCGAUCUAUCCAUGAGCAGGUUGAAGGUUAGGUAACACUGACUGGAGGACCGAACCCACUCCCGUUGAAAAGGUAGGGGAUGACUUGUGGAUCGGAGUGAAAGGCUAAUCAAGCUCGGAGAUAGCUGGUUCUCCUCGAAAGCUAUUUAGGUAGCGCCUCAUGUAUCACUCUGGGGGGUAGAGCACUGUUUCGGCUAGGGGGUCAUCCCGACUUACCAAACCGAUGCAAACUCCGAAUACCCAGAAGUGCCGAGCAUGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGAAAAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUUGUGGUUAAGUGGUAAACGAUGUGGGAAGGCUUAGACAGCUAGGAGGUUGGCUUAGAAGCAGCCACCCUUUAAAGAAAGCGUAAUAGCUCACUAGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCUCAAACCACACACCGAAGCUGCGGGUGUCACGUAAGUGACGCGGUAGAGGAGCGUUCUGUAAGCCUGUGAAGGUGAGUUGAGAAGCUUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUGAGUAACGACAAUGGGUGUGAAAAACACCCACGCCGAAAGACCAAGGGUUCCUGCGCAACGUUAAUCGACGCAGGGUUAGUCGGUUCCUAAGGCGAGGCUGAAAAGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUCUGGUUACUGCGAUGGAGGGACGGAGAAGGCUAGGCCAGCUUGGCGUUGGUUGUCCAAGUUUAAGGUGGUAGGCUGAAAUCUUAGGUAAAUCCGGGGUUUCAAGGCCGAGAGCUGAUGACGAGUCGUCUUUUAGAUGACGAAGUGGUUGAUGCCAUGCUUCCAAGAAAAGCUUCUAAGCUUCAGGUAACCAGGAACCGUACCCCAAACCGACACAGGUGGUCGGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGCUAGGGUGAAGGAUUUACUCCGUAAGCUCUGGCUGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGAUGGCGGCGCUGUCUCCACCCGAGACUCAGUGAAAUUGAAAUCGCUGUGAAGAUGCAGUGUAUCCGCGGCUAGACGGAAAGACCCCGUGAACCUUUACUGUAGCUUUGCACUGGACUUUGAGCCUGCUUGUGUAGGAUAGGUGGGAGGCUUUGAAGCGUGGACGCCAGUUCGCGUGGAGCCAUCCUUGAAAUACCACCCUGGCAUGCUUGAGGUUCUAACUCUGGUCCGUAAUCCGGAUCGAGGACAGUGUAUGGUGGGCAGUUUGACUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGUACGAAGGUGCGCUCAGACCGGUCGGAAAUCGGUCGCAGAGUAUAAAGGCAAAAGCGCGCUUGACUGCGAGACAGACACGUCGAGCAGGUACGAAAGUAGGUCUUAGUGAUCCGGUGGUUCUGUAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGAAGCCGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGACGUUUGAGAUUUGAGAGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGAACCUCUGGUGUUCCGGUUGUCACGCCAGUGGCAUUGCCGGGUAGCUAUGUUCGGAAAAGAUAACCGCUGAAAGCAUCUAAGCGGGAAACUUGCCUCAAGAUGAGAUCUCACUGGGAACUUGAUUCCCCUGAAGGGCCGUCGAAGACUACGACGUUGAUAGGCUGGGUGUGUAAGCGUUGUGAGGCGUUGAGCUAACCAGUACUAAUGGCCCGUGAGGCUUGACC |
| 5S ribosomal RNA | b | 117 | NA | GCUUGACGAUCAUAGAGCGUUGGAACCACCUGAUCCCUUCCCGAACUCAGAAGUGAAACGACGCAUCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGUCAUCGUCAAGC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L13 | J | 141 | Vibrio Nigripulchritudo | KTYTAKPETVQRDWFVVDAAGQTLGRLATEIARRLRGKHKPEYTPHVDTGDYIVVINAEQVRVTGAKTTDKMYYHHSGFPGGIKSINFEKLIAKAPERVIETAVKGMLPKNPLGRDMYRKLKVYKGASHPHTAQQPQELKI |
| 50S ribosomal protein L14 | K | 120 | Vibrio Nigripulchritudo | MIQTQSMLDVADNSGARRVMCIKVLGGSHRRYAGIGDIIKVTVKEAIPRGKVKKGQVMTAVVVRTKHGVRRTDGSIIRFDGNAAVLLNNKQEPIGTRIFGPVTRELRTEKFMKIVSLAPE |
| 50S ribosomal protein L15 | L | 143 | Vibrio Nigripulchritudo | QLNDLRSAPGARREKHRPGRGIGSGLGKTGGRGHKGLTSRSGGKVAPGFEGGQQPLHRRLPKFGFVSLKAMDRAEVRTSELAKVEGDVVSLQTLKDANLINQHVQRVKVMLSGEVGRAVTLKGIAATKGARAAIEAAGGKFED |
| 50S ribosomal protein L16 | M | 135 | Vibrio Nigripulchritudo | MLQPKRTKFRKQMTGHNRGLAHRGSKVSFGEYALKATSRGRLTARQIESARRALTRHVKRGGKIWIRVFPDKPVTKKPLEVRMGKGKGGVEYWVAQIQPGKVLYEIEGVSEELAREAFALAAAKLPLATSFVKRT |
| 50S ribosomal protein L17 | N | 118 | Vibrio Nigripulchritudo | MRHRKSGRHLSRTSAHRKAMFQNMAVSLFEHELIKTTLPKAKELRRVAEPLITLAKEDSVANRRLAFDRTRSKAAVGKLFNDLGKRYANRPGGYLRILKCGFRAGDNAPMAYVELVDR |
| 50S ribosomal protein L18 | O | 115 | Vibrio Nigripulchritudo | SVKKETRLRRARKARLKMRELETVRLCVYRSSQHIYAQVIAADGGKVLASASTLDKDLREGATGNIDAAKKVGQLVAERAKAAGVTQVAFDRSGFKYHGRVKALADAAREGGLEF |
| 50S ribosomal protein L19 | P | 113 | Vibrio Nigripulchritudo | KIIQQIEAEQMNKEIPAFAPGDTVIVQVKVKEGDRQRLQAFEGVVIAKRNRGLNSAFTVRKISNGVGVERTFQTYSPIVDSLSVKRRGDVRKAKLYYLRALSGKAARIKEKLV |
| 50S ribosomal protein L20 | Q | 117 | Vibrio Nigripulchritudo | ARVKRGVIARRRHKKILKLAKGYYGARSRVFRVAKQAVIKAGQYAYRDRRQRKRQFRALWIARINAGARQNGLSYSRLIAGLKKAAIEIDRKVLADLAVNEKAAFTAIVEKAKASLA |
| 50S ribosomal protein L21 | R | 102 | Vibrio Nigripulchritudo | MYAVIVTGGKQHKVTEGEFLKVEKLDVATGEAIDFDRVLLVANGEDVKIGLPVVEGAKVTAEVVSHGRHDKVRIIKFRRRKHHMKRQGHRQWFTEIKITGIQ |
| 50S ribosomal protein L22 | S | 109 | Vibrio Nigripulchritudo | EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVADK |
| 50S ribosomal protein L23 | T | 92 | Vibrio Nigripulchritudo | NQERVFKVLLGPHISEKATGLADGKSQFVFKVATDATKLEIKKAVESLFSVKVQRVTTLNVKGKTKRTARGLGKRNDWKKAYIALQPGQDLD |
| 50S ribosomal protein L24 | U | 103 | Vibrio Nigripulchritudo | MQKIRRDDEVIVIAGKDKGKRGKVLKVLADDRLVVGGVNLIKRHTKPNPMLGQQGGIVEKEAPLHVSNVAIFNTETSKADRVGFKVEDGKKIRVFKSTQKPVQ |
| 30S ribosomal protein S3 | C | 205 | Vibrio Nigripulchritudo | QKVHPNGIRLGIVKEHTSVWYADRKNYADYLFADLKVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRADIDYATYEAHTTYGVIGVKVWIFKGEV |
| 30S ribosomal protein S4 | D | 205 | Vibrio Nigripulchritudo | ARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQHGQRRGRLSDYGLQLREKQKVRRIYGVLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLVSHKAITVNGQTVNIPSYQVKAGDVVAVREKSKNQLRIAQALELCGQRGRVEWVEVDLDKKAGTFKSAPARSDLSADINENLIVELYSK |
| 30S ribosomal protein S5 | E | 156 | Vibrio Nigripulchritudo | GYIEKLVQVNRVAKTVKGGRIFAFTALTVVGDGKGRVGFGRGKAREVPAAIQKAMEAARRNMIQVDLNGTTLQYPTKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKNMQAPEAVAAKRGKSVEEIL |
| 30S ribosomal protein S6 | F | 105 | Vibrio Nigripulchritudo | RHYEIVFLVHPDQSEQVGGMVERYTKAIEEDGGKIHRLEDWGRRQLAYAINNVHKAHYVLMNVECSAKALAELEDNFRYNDAVIRNLVMRRDEAVTEQSEMLKAE |
| 30S ribosomal protein S7 | G | 154 | Vibrio Nigripulchritudo | RRRVAAKREVLADPKYGSQILAKFMNHVMESGKKAVAERIVYGALDKVKERGKADPLETFEKALDAIAPLVEVKSRRVGGATYQVPVEVRPSRRNALAMRWLVDFARKRGEKSMALRLAGELLDAAEGKGAAVKKREDVHRMAEANKAFSHYRF |
| 30S ribosomal protein S8 | H | 129 | Vibrio Nigripulchritudo | SMQDPLADMLTRIRNAQMAEKTVVSMPSSKLKAAVAKVLKDEGYIADFQISSEVKPQLSIELKYFEGKPVIEEVKRISRPGLRQYKSVEQLPKVRGGLGVSIVSTNKGVMTDRAARAAGVGGEVLCTVF |
| 30S ribosomal protein S9 | I | 126 | Vibrio Nigripulchritudo | ATQNYGTGRRKTATARVFLRPGTGKISINNRGLDQFFGRETARMVVRQPLELTETVEKFDIFVTVVGGGVSGQAGAIRHGITRALIEYDETLRSSLRKAGYVTRDAREVERKKVGLRKARKRPQYS |
| 50S ribosomal protein L25 | V | 188 | Vibrio Nigripulchritudo | FIVNAQVRSDLGKGASRRLRRNAGLVPAVVYGGDKEPQSVTLELREIAKLLENEAAFSHVIALNVGGVKETVLIKALQRHPAKGFVMHADFLRVVADHKLTAHVPLHFINEEVAVGVKQAGGEISHTISEVEVSCLPKDLPEFIEVDMAKVELGQIVHLSDLKAPKGVELVQLAHGNDLAVANIHASR |
| 50S ribosomal protein L27 | W | 76 | Vibrio Nigripulchritudo | TRNGRDSESKRLGVKLFGGQAVKAGNILVRLRGTKFHAGYGVGLGKDHTLFAKVDGVVKFETKGAFGRKYVSIVAA |
| 50S ribosomal protein L28 | X | 77 | Vibrio Nigripulchritudo | SRVCQVTGKGPVTGNNISHAHNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIEAVLADLRARGEKF |
| Ribosomal protein uL29 | Y | 60 | Vibrio Nigripulchritudo | KANELREEKSGPVTGNNISHLLRDQFNLRMQKATGQLGQSHLLSQVKRDIARVKTVLNQQ |
| 50S ribosomal protein L30 | Z | 57 | Vibrio Nigripulchritudo | ATVKVTLVKSLNGRLANHKACVKGLGLRRINHTVEVQDTPENRGMINKAYYLLRVEG |
| 50S ribosomal protein L31 | 1 | 31 | Vibrio Nigripulchritudo | KADIHPTYEAIEATCSCGNVIKTRSTLCKPI |
| 50S ribosomal protein L32 | 2 | 53 | Vibrio Nigripulchritudo | AVQQNKKSRSARDMRRSHDALESNALSVEKSTGEVHLRHHVSPDGFYRGRKVV |
| 50S ribosomal protein L33 | 3 | 50 | Vibrio Nigripulchritudo | RELIRLVSSAGTGHFYTTDKNKRTKPEKIEIKKYDPVVRQHVIYKEAKIK |
| 50S ribosomal protein L34 | 4 | 44 | Vibrio Nigripulchritudo | MKRTFQPSTLKRARVHGFRARMATKNGRQVLSRRRAKGRKRLTV |
| 50S ribosomal protein L35 | 5 | 63 | Vibrio Nigripulchritudo | PKMKTKSGAAKRFKKTAGGLKHKHAFKSHILTKMTTKRKRQLRGTSMLNKSDVARVERSLRLR |
| 50S ribosomal protein L36 | 6 | 38 | Vibrio Nigripulchritudo | MKVRASVKKLCRNCKIIRRDGIVRVICSAEPRHKQRQG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-09-01 Deposition Author(s): Bashan, A. , Belousoff, M. , Espinos, R. , Eyal, Z. , Halfon, Y. , Jimenez-Fernande, A. , Krogh Johansen, H. , La Ros, R. , Matzov, D. , Molin, S. , Yonath, A. , Zimmerman, E.