6SPF
Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
PDB DOI: 10.2210/pdb6spf/pdb
Classification: RIBOSOME Organism(s): Pseudomonas Aeruginosa
Deposited: 2019-09-01 Deposition Author(s): Bashan, A. , Belousoff, M. , Espinos, R. , Eyal, Z. , Halfon, Y. , Jimenez-Fernande, A. , Krogh Johansen, H. , La Ros, R. , Matzov, D. , Molin, S. , Yonath, A. , Zimmerman, E.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.89 Å
Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
Bashan, A. , Belousoff, M. , Espinos, R. , Eyal, Z. , Halfon, Y. , Jimenez-Fernande, A. , Krogh Johansen, H. , La Ros, R. , Matzov, D. , Molin, S. , Yonath, A. , Zimmerman, E.
Primary Citation of Related Structures: 6SPF
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S rRNA | a | 1521 | NA | GAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGGAUGAAGGGAGCUUGCUCCUGGAUUCAGCGGCAGACGGGUGAGUAAUGCCUAGGAAUCUGCCUGGUAGUGGGGGAUAACGUCCGGAAACGGGCGCUAAUACCGCAUACGUCCUGAGGGAGAAAGUGGGGGAUCUUCGGACCUCACGCUAUCAGAUGAGCCUAGGUCGGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCCGUAACUGGUCUGAGAGGAUGAUCAGUCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGAAAGCCUGAUCCAGCCAUGCCGCGUGUGUGAAGAAGGUCUUCGGAUUGUAAAGCACUUUAAGUUGGGAGGAAGGGCAGUAAGUUAAUACCUUGCUGUUUUGACGUUACCAACAGAAUAAGCACCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCGCGUAGGUGGUUCAGCAAGUUGGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCCAAAACUACUGAGCUAGAGUACGGUAGAGGGUGGUGGAAUUUCCUGUGUAGCGGUGAAAUGCGUAGAUAUAGGAAGGAACACCAGUGGCGAAGGCGACCACCUGGACUGAUACUGACACUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUAGCCGUUGGGAUCCUUGAGAUCUUAGUGGCGCAGCUAACGCGAUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCUGGCCUUGACAUGCUGAGAACUUUCCAGAGAUGGAUUGGUGCCUUCGGGAACUCAGACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGUAACGAGCGCAACCCUUGUCCUUAGUUACCAGCACCUCGGGUGGGCACUCUAAGGAGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGGCCAGGGCUACACACGUGCUACAAUGGUCGGUACAAAGGGUUGCCAAGCCGCGAGGUGGAGCUAAUCCCAUAAAACCGAUCGUAGUCCGGAUCGCAGUCUGCAACUCGACUGCGUGAAGUCGGAAUCGCUAGUAAUCGUGAAUCAGAAUGUCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCUCCAGAAGUAGCUAGUCUAACCGCAAGGGGGACGGUUACCACGGAGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGGAU |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S10 | J | 96 | Pseudomonas Aeruginosa | IRLKAFDHRLIDQSTQEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRVLDIVQPTDKTVDALMKLDLAAGVEVQISLG |
| 30S ribosomal protein S11 | K | 115 | Pseudomonas Aeruginosa | KTVVDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAVRALNACGYKIASITDVTPIPHNGCRPPKKRR |
| 30S ribosomal protein S12 | L | 120 | Pseudomonas Aeruginosa | ATINQLVRKPRKRMVDKSDVPALQNCPQRRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVSSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDTSGVKDRKQGRSKYGAKR |
| 30S ribosomal protein S13 | M | 110 | Pseudomonas Aeruginosa | RIAGVNIPDNKHTVISLTYIYGVGRTTAQSICAATGVNPAAKIKDLSDEQIDQLRNEVAKITTEGDLRREINMNIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGP |
| 30S ribosomal protein S14 | N | 98 | Pseudomonas Aeruginosa | KESMKNRELKRQLTVAKYAKKRAELKAIIANPNSSAEERWNAQVALQKQPRDASASRLRNRCRLTGRPHGFYRKFGLSRNKLREAAMRGDVPGLVKAS |
| 30S ribosomal protein S15 | O | 87 | Pseudomonas Aeruginosa | ALSVEEKAQIVNEYKQAEGDTGSPEVQVALLSANINKLQDHFKANGKDHHSRRGLIRMVNQRRKLLDYLKGKDVSRYTALIGRLGLR |
| 30S ribosomal protein S16 | P | 78 | Pseudomonas Aeruginosa | MVTIRLARGGSKKRPFYHLTVTNSRNARDGRFVERIGFFNPVATGGEVRLSVDQERATYWLGQGAQPSERVAQLLKDA |
| 30S ribosomal protein S17 | Q | 76 | Pseudomonas Aeruginosa | RTLTGRVVSDKMDKTVTVLIERRVKHPIYGKYVKRSTKLHAHDESNQCRIGDLVTIRETRPLAKTKAWTLVDIVER |
| 30S ribosomal protein S18 | R | 56 | Pseudomonas Aeruginosa | KEIDYKDLNTLKAYVSETGKIVPSRITGTKAKYQRQLATAIKRARYLALLPYTDSH |
| 30S ribosomal protein S19 | S | 80 | Pseudomonas Aeruginosa | PRSLKKGPFIDLHLLKKVEVAVEKNDRKPIKTWSRRSMILPHMVGLTIAVHNGRQHVPVLVNEDMVGHKLGEFAATRTYR |
| 30S ribosomal protein S2 | B | 226 | Pseudomonas Aeruginosa | QVNMRDMLKAGVHFGHQTRYWNPKMGKFIFGARNKIHIINLEKTLPMFNEALTFVERLAAGKNKILFVGTKRSAGKIVREEAARCGMPYVDHRWLGGMLTNYKTIRQSIKRLRDLETQSQDGTFDKLTKKEALMRSRDLEKLERSLGGIKDMGGLPDALFVIDVDHERIAITEANKLGIPVIGVVDTNSSPEGVDYVIPGNDDAIRAVQLYLNSMAEAVIRGKQGA |
| 30S ribosomal protein S20 | T | 86 | Pseudomonas Aeruginosa | ANTPSAKKRAKQAEKRRSHNASLRSMVRTYIKNVVKAIDAKDLEKAQAAFTAAVPVIDRMADKGIIHKNKAARHKSRLSGHIKALS |
| 30S ribosomal protein S21 | U | 34 | Pseudomonas Aeruginosa | SREFYEKPTAERRRKAAAAVKRHAKKVQREQRRR |
| 50S ribosomal protein L25 | V | 188 | Pseudomonas Aeruginosa | FIVNAQVRSDLGKGASRRLRRNAGLVPAVVYGGDKEPQSVTLELREIAKLLENEAAFSHVIALNVGGVKETVLIKALQRHPAKGFVMHADFLRVVADHKLTAHVPLHFINEEVAVGVKQAGGEISHTISEVEVSCLPKDLPEFIEVDMAKVELGQIVHLSDLKAPKGVELVQLAHGNDLAVANIHASR |
| 50S ribosomal protein L27 | W | 76 | Pseudomonas Aeruginosa | TRNGRDSESKRLGVKLFGGQAVKAGNILVRLRGTKFHAGYGVGLGKDHTLFAKVDGVVKFETKGAFGRKYVSIVAA |
| 50S ribosomal protein L28 | X | 77 | Pseudomonas Aeruginosa | SRVCQVTGKGPVTGNNISHAHNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIEAVLADLRARGEKF |
| Ribosomal protein uL29 | Y | 60 | Pseudomonas Aeruginosa | KANELREEKSGPVTGNNISHLLRDQFNLRMQKATGQLGQSHLLSQVKRDIARVKTVLNQQ |
| 50S ribosomal protein L30 | Z | 57 | Pseudomonas Aeruginosa | ATVKVTLVKSLNGRLANHKACVKGLGLRRINHTVEVQDTPENRGMINKAYYLLRVEG |
| 50S ribosomal protein L31 | 1 | 31 | Pseudomonas Aeruginosa | KADIHPTYEAIEATCSCGNVIKTRSTLCKPI |
| 50S ribosomal protein L32 | 2 | 53 | Pseudomonas Aeruginosa | AVQQNKKSRSARDMRRSHDALESNALSVEKSTGEVHLRHHVSPDGFYRGRKVV |
| 50S ribosomal protein L33 | 3 | 50 | Pseudomonas Aeruginosa | RELIRLVSSAGTGHFYTTDKNKRTKPEKIEIKKYDPVVRQHVIYKEAKIK |
| 30S ribosomal protein S3 | C | 203 | Pseudomonas Aeruginosa | VHPNGIRLGIVKEHTSVWYADRKNYADYLFADLKVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRADIDYATYEAHTTYGVIGVKVWIFKGEV |
| 50S ribosomal protein L34 | 4 | 44 | Pseudomonas Aeruginosa | MKRTFQPSTLKRARVHGFRARMATKNGRQVLSRRRAKGRKRLTV |
| 50S ribosomal protein L35 | 5 | 63 | Pseudomonas Aeruginosa | PKMKTKSGAAKRFKKTAGGLKHKHAFKSHILTKMTTKRKRQLRGTSMLNKSDVARVERSLRLR |
| 50S ribosomal protein L36 | 6 | 38 | Pseudomonas Aeruginosa | MKVRASVKKLCRNCKIIRRDGIVRVICSAEPRHKQRQG |
| 50S ribosomal protein L3 | D | 207 | Pseudomonas Aeruginosa | IGVVGRKCGMTRIFTEEGVSIPVTVIEVEPNRVTQFKTEETDGYRAVQVTAGERRASRVTKAQAGHFAKANVAAGRGVWEFRLGEEQYAAGDQITVDLFQAGQMVDVTGESKGKGFAGTIKRWNFRGQDNTHGNSVSHRVPGSIGQCQTPGRVFKGKKMSGHLGAERVTVQSLEIVRVDAERNLLLVKGAVPGATGGDVIVRPAAKA |
| 50S ribosomal protein L4 | E | 199 | Pseudomonas Aeruginosa | QLNVNGAQAIEVSERTFGGEFNETLVHQAVVAYMAGGRQGSKAQKTRSEVSGGGKKPWRQKGTGRARAGTIRSPIWRGGGTTFAAKPRSHEQKLNKKMYRAALRSILAELVRLDRLVVVADFAVDAPKTKGLVAKLDTLGLKDVLIVTDGVDENLYLAARNLAHVDVRDVQGSDPVSLIAYDKVLVTVSAVKKFEELLG |
| 50S ribosomal protein L5 | F | 174 | Pseudomonas Aeruginosa | RLKELYRKEIAPKLKEELQLANVMEVPRVTKITLNMGLGEAVGDKKIIENAVADLEKITGQKPVVTYARKSIAGFKIREGWPIGVKVTLRSDRMYEFLDRLLSISLPRVRDFRGLNAKSFDGRGNYSMGVKEQIIFPEIDYDKIDALRGLDITLTTTARTDDEGRALLRAFKFP |
| 50S ribosomal protein L6 | G | 169 | Pseudomonas Aeruginosa | SRVAKNPVKLPAGVEIKLAGQQLSIKGAKGALELKVHPSVEVIQDSGELRFAARNGDQQTRAMAGTTRALVNNMVVGVSQGFERKLQLVGVQAKGQVLSLSLGFSHPVDYELPAGIVAETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEA |
| 50S ribosomal protein L9 | H | 78 | Pseudomonas Aeruginosa | EVILLEKVANLGNLGDKVNIKGGYARNFLLPQGKATVATAENVAAFEARRAELEKAAAEKKAAAEARAAQLSELVVTL |
| 50S ribosomal protein L11 | I | 140 | Pseudomonas Aeruginosa | KKIQAYIKLQVKAGQANPSPPVGPALGQHGVNIMEFCKAFNAKTQGQEPGLPTPVIITVYSDRSFTFETKSTPAAVLLKKAAGITSGSARPNSQKVGTVTRAQLEEIAKTKQADLTAADLDAAVRTIAGSARSMGLNVEG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-09-01 Deposition Author(s): Bashan, A. , Belousoff, M. , Espinos, R. , Eyal, Z. , Halfon, Y. , Jimenez-Fernande, A. , Krogh Johansen, H. , La Ros, R. , Matzov, D. , Molin, S. , Yonath, A. , Zimmerman, E.