6SPC
Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate
PDB DOI: 10.2210/pdb6spc/pdb
Classification: RIBOSOME Organism(s): Vibrio Nigripulchritudo
Deposited: 2019-09-01 Deposition Author(s): Bashan, A. , Belousoff, M. , Espinos, R. , Eyal, Z. , Halfon, Y. , Jimenez-Fernande, A. , Krogh Johansen, H. , La Ros, R. , Matzov, D. , Molin, S. , Yonath, A. , Zimmerman, E.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.95 Å
Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate
Bashan, A. , Belousoff, M. , Espinos, R. , Eyal, Z. , Halfon, Y. , Jimenez-Fernande, A. , Krogh Johansen, H. , La Ros, R. , Matzov, D. , Molin, S. , Yonath, A. , Zimmerman, E.
Primary Citation of Related Structures: 6SPC
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S rRNA | a | 1519 | NA | AAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACAAUGCAAGUCAGCGGAUAAAGGGAGCUUGCUCCUGGAUUCAGCGGCAGACGGGUGAGUAAUGCCUAGGAAUCUGCCUGGUAGUGGGGGAUAACGUCCGGAAACGGGCGCUAAUACCGCAUACGUCCUGAGGGAGAAAGUGGGGGAUCUUCGGACCUCACGCUAUCAGAUGAGCCUAGGUCGGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCCGUAACUGGUCUGAGAGGAUGAUCAGUCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGAAAGCCUGAUCCAGCCAUGCCGCGUGUGUGAAGAAGGUCUUCGGAUUGUAAAGCACUUUAAGUUGGGAGGAAGGGCAGUAAGUUAAUACCUUGCUGUUUUGACGUUACCAACAGAAUAAGCACCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCGCGUAGGUGGUUCAGCAAGUUGGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCCAAAACUACUGAGCUAGAGUACGGUAGAGGGUGGUGGAAUUUCCUGUGUAGCGGUGAAAUGCGUAGAUAUAGGAAGGAACACCAGUGGCGAAGGCGACCACCUGGACUGAUACUGACACUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUAGCCGUUGGGAUCCUUGAGAUCUUAGUGGCGCAGCUAACGCGAUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCUGGCCUUGACAUGCUGAGAACUUUCCAGAGAUGGAUUGGUGCCUUCGGGAACUCAGACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGUAACGAGCGCAACCCUUGUCCUUAGUUACCAGCACCUCGGGUGGGCACUCUAAGGAGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGGCCAGGGCUACACACGUGCUACAAUGGUCGGUACAAAGGGUUGCCAAGCCGCGAGGUGGAGCUAAUCCCAUAAAACCGAUCGUAGUCCGGAUCGCAGUCUGCAACUCGACUGCGUGAAGUCGGAAUCGCUAGUAAUCGUGAAUCAGAAUGUCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCUCCAGAAGUAGCUAGUCUAACCGCAAGGGGGACGGUUACCACGGAGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGGAU |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S10 | J | 96 | Vibrio Nigripulchritudo | IRLKAFDHRLIDQSTQEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRVLDIVQPTDKTVDALMKLDLAAGVEVQISLG |
| 30S ribosomal protein S11 | K | 115 | Vibrio Nigripulchritudo | KTVVDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAVRALNACGYKIASITDVTPIPHNGCRPPKKRR |
| 30S ribosomal protein S12 | L | 120 | Vibrio Nigripulchritudo | ATINQLVRKPRKRMVDKSDVPALQNCPQRRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVSSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDTSGVKDRKQGRSKYGAKR |
| 30S ribosomal protein S13 | M | 109 | Vibrio Nigripulchritudo | RIAGVNIPDNKHTVISLTIYGVGRTTAQSICAATGVNPAAKIKDLSDEQIDQLRNEVAKITTEGDLRREINMNIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGP |
| 30S ribosomal protein S14 | N | 98 | Vibrio Nigripulchritudo | KESMKNRELKRQLTVAKYAKKRAELKAIIANPNSSAEERWNAQVALQKQPRDASASRLRNRCRLTGRPHGFYRKFGLSRNKLREAAMRGDVPGLVKAS |
| 30S ribosomal protein S15 | O | 87 | Vibrio Nigripulchritudo | ALSVEEKAQIVNEYKQAEGDTGSPEVQVALLSANINKLQDHFKANGKDHHSRRGLIRMVNQRRKLLDYLKGKDVSRYTALIGRLGLR |
| 30S ribosomal protein S16 | P | 78 | Vibrio Nigripulchritudo | MVTIRLARGGSKKRPFYHLTVTNSRNARDGRFVERIGFFNPVATGGEVRLSVDQERATYWLGQGAQPSERVAQLLKDA |
| 30S ribosomal protein S17 | Q | 76 | Vibrio Nigripulchritudo | RTLTGRVVSDKMDKTVTVLIERRVKHPIYGKYVKRSTKLHAHDESNQCRIGDLVTIRETRPLAKTKAWTLVDIVER |
| 30S ribosomal protein S18 | R | 56 | Vibrio Nigripulchritudo | KEIDYKDLNTLKAYVSETGKIVPSRITGTKAKYQRQLATAIKRARYLALLPYTDSH |
| 30S ribosomal protein S19 | S | 80 | Vibrio Nigripulchritudo | PRSLKKGPFIDLHLLKKVEVAVEKNDRKPIKTWSRRSMILPHMVGLTIAVHNGRQHVPVLVNEDMVGHKLGEFAATRTYR |
| 30S ribosomal protein S2 | B | 221 | Vibrio Nigripulchritudo | QVNMRDMLKAGVHFGHQTRYWNPKMGKFIFGARNKIHIINLEKTLPMFNEALTFVERLAAGKNKILFVGTKRSAGKIVREEAARCGMPYVDHRWLGGMLTNYKTIRQSIKRLRDLETQSQDGTKKEALMRSRDLEKLERSLGGIKDMGGLPDALFVIDVDHERIAITEANKLGIPVIGVVDTNSSPEGVDYVIPGNDDAIRAVQLYLNSMAEAVIRGKQGA |
| 30S ribosomal protein S20 | T | 86 | Vibrio Nigripulchritudo | ANTPSAKKRAKQAEKRRSHNASLRSMVRTYIKNVVKAIDAKDLEKAQAAFTAAVPVIDRMADKGIIHKNKAARHKSRLSGHIKALS |
| 30S ribosomal protein S21 | U | 34 | Vibrio Nigripulchritudo | SREFYEKPTAERRRKAAAAVKRHAKKVQREQRRR |
| 30S ribosomal protein S3 | C | 203 | Vibrio Nigripulchritudo | VHPNGIRLGIVKEHTSVWYADRKNYADYLFADLKVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRADIDYATYEAHTTYGVIGVKVWIFKGEV |
| 30S ribosomal protein S4 | D | 205 | Vibrio Nigripulchritudo | ARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQHGQRRGRLSDYGLQLREKQKVRRIYGVLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLVSHKAITVNGQTVNIPSYQVKAGDVVAVREKSKNQLRIAQALELCGQRGRVEWVEVDLDKKAGTFKSAPARSDLSADINENLIVELYSK |
| 30S ribosomal protein S5 | E | 149 | Vibrio Nigripulchritudo | GYIEKLVQVNRVAKTVKGGRIFAFTALTVVGDGKGRVGFGRGKAREVPAAIQKAMEAARRNMIQVDLNGTTLQYPTKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKNMQPEAVAAKRGK |
| 30S ribosomal protein S6 | F | 100 | Vibrio Nigripulchritudo | RHYEIVFLVHPDQSEQVGGMVERYTKAIEEDGGKIHRLEDWGRRQLAYAINNVHKAHYVLMNVECSAKALAELEDNFRANDAVIRNLVMRRDEAVTEQSE |
| 30S ribosomal protein S7 | G | 154 | Vibrio Nigripulchritudo | RRRVAAKREVLADPKYGSQILAKFMNHVMESGKKAVAERIVYGALDKVKERGKADPLETFEKALDAIAPLVEVKSRRVGGATYQVPVEVRPSRRNALAMRWLVDFARKRGEKSMALRLAGELLDAAEGKGAAVKKREDVHRMAEANKAFSHYRF |
| 30S ribosomal protein S8 | H | 125 | Vibrio Nigripulchritudo | SMQDPLADMLTRIRNAQMAEKTVVSMPSSKLKAAVAKVLKDEGYIADFQISSEVKPQLSIELKYFEGKPVIEEVKRISRPGLRQYKSVEQLPAVRGGLGVSIVSTNKGVMTDRAARAAGVGGEVV |
| 30S ribosomal protein S9 | I | 126 | Vibrio Nigripulchritudo | ATQNYGTGRRKTATARVFLRPGTGKISINNRGLDQFFGRETARMVVRQPLELTETVEKFDIFVTVVGGGVSGQAGAIRHGITRALIEYDETLRSSLRKAGYVTRDAREVERKKVGLRKARKRPQYS |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-09-01 Deposition Author(s): Bashan, A. , Belousoff, M. , Espinos, R. , Eyal, Z. , Halfon, Y. , Jimenez-Fernande, A. , Krogh Johansen, H. , La Ros, R. , Matzov, D. , Molin, S. , Yonath, A. , Zimmerman, E.