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6SIC

Cryo-em structure of the type iii-b cmr-beta bound to cognate target rna

PDB DOI: 10.2210/pdb6sic/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Sulfolobus Islandicus Rey15A , Synthetic Construct

Deposited: 2019-08-09
Deposition Author(s): Montoya, G. , Sofos, N. , Stella, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.52 Å

6sic
Literature

Cryo-em structure of the type iii-b cmr-beta bound to cognate target rna

Montoya, G. , Sofos, N. , Stella, S.

Primary Citation of Related Structures: 6SIC


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated protein, Cmr5 family A 155 Sulfolobus Islandicus Rey15A , Synthetic Construct MLYEEDYKLALEAFKKVFNALTHYGAKQAFRSRARDLVEEIYNSGFIPTFFYIISKAELNSDSLDSLISLFSSDNAILRGSDENVSYSAYLFIILYYLIKRGIIEQKFLIQALRCEKTRLDLIDKLYNLAPIISAKIRTYLLAIKRLSEALIEAR
CRISPR-associated protein, Cmr5 family B 155 Sulfolobus Islandicus Rey15A , Synthetic Construct MLYEEDYKLALEAFKKVFNALTHYGAKQAFRSRARDLVEEIYNSGFIPTFFYIISKAELNSDSLDSLISLFSSDNAILRGSDENVSYSAYLFIILYYLIKRGIIEQKFLIQALRCEKTRLDLIDKLYNLAPIISAKIRTYLLAIKRLSEALIEAR
CRISPR-associated protein, Cmr5 family C 155 Sulfolobus Islandicus Rey15A , Synthetic Construct MLYEEDYKLALEAFKKVFNALTHYGAKQAFRSRARDLVEEIYNSGFIPTFFYIISKAELNSDSLDSLISLFSSDNAILRGSDENVSYSAYLFIILYYLIKRGIIEQKFLIQALRCEKTRLDLIDKLYNLAPIISAKIRTYLLAIKRLSEALIEAR
CRISPR-associated RAMP protein, Cmr4 family D 286 Sulfolobus Islandicus Rey15A , Synthetic Construct MPYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLKSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSVLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI
CRISPR-associated RAMP protein, Cmr4 family E 286 Sulfolobus Islandicus Rey15A , Synthetic Construct MPYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLKSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSVLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI
CRISPR-associated RAMP protein, Cmr4 family F 286 Sulfolobus Islandicus Rey15A , Synthetic Construct MPYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLKSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSVLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI
CRISPR-associated RAMP protein, Cmr4 family G 286 Sulfolobus Islandicus Rey15A , Synthetic Construct MPYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLKSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSVLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI
CRISPR-associated protein, Cmr3 family H 313 Sulfolobus Islandicus Rey15A , Synthetic Construct MKRVLIKPLEPLMFRSQGEFEPLITGSHTAAQSLIIPRPSTIAGMLGYILFNKSSGTGDWLSDLTNLLATIYGTFIETNGEYLFPLRMGNHLALVDQQHLINLPTLLEKEYERREKGIYELFYDKNKLFQIINHQDRIGISIDKSTRTVKEHYLYSARYLAFKKEVNYVIFIDNDAISDKINGKIVNFGGENRIAKLEVDDYKVDTSIEEEYYLALSPILIPDEALDNFLDNISDYVAMGKVDKISLGFDIANTKRKEMLTAILEGSIVKRSIIDFIKNEIKNDLRYRFSKYEKIGYNTLMSLCKLALRKILS
CRISPR-associated RAMP protein, Cmr6 family I 296 Sulfolobus Islandicus Rey15A , Synthetic Construct MAIDFLVNILELIKEKQCNINLFSAISLTSIVYNNFGEFLSNNQSYSTNNPLLKYHIIILNDKNKTKDVEEKRNIFKREVAELISRNFKLDGEKVRNYFDSLKEVLKSLKYTIVDVEITTRTRALIGVSTSLGKLIFGSGISFDPYMNLPYIPASEIKGIVRSYIEGKLGEQEAEEIFGNEEREGNVNFTDAYPTRSKDFLFVPDVITPHYNGKKSEADAEPRPVIHLTIAPKVTFRFLIYYKREDVGKPICDSMPIILIRGLGARSSVGYSLFELRKIEVIKAAAHHHHHHHHHH
CRISPR-associated RAMP protein, Cmr1 family J 476 Sulfolobus Islandicus Rey15A , Synthetic Construct MEELLMSLKLKALYPLTGGYNRHSINPFYEELVRPTEIKGLWRWWNRVLFNTLAYSTKGKLYTYESIDRLFEDVFGSENKKSAVRLEVITDEGNDNRFELSYVELDKVIDCLRNYKRKVSLDFIDNTLIAEIEGSTKIPISFKSNLDIDKIIKDLVHNNKLLSFELLGFKSVEIDATKISDKKILKEILRDLITNYLEYFNIKQEVTFTLNIYLDKSREHKQNFEDKLKFALYSLLVFILLGGIGRKTSRGFGSLSIIDVKCYDNSICKKIEDLAKNFLKISSGNELKSKIESILDCIKNSCIDTLYIENNILSEIDPKKNVVYFINSDLFEVKRINDKEKVLANIYKAVSSEGCCIKSIITDKYVRKSFLIAFGGYRKVEKDKGLDIGFIKNYLCETCETVSSFNIVDFLLSEGSFMSDYILQYEHRNSLLRFKLISDNSNNSYLIGYILHSSYFKKIDIKYVRCILEKLTYCVI
CRISPR-associated protein, Cmr2 family K 1037 Sulfolobus Islandicus Rey15A , Synthetic Construct MSIDNVLREFLDYKIIALLHDPPNKAWVITGRARNLTQQLSNIRASRKHEKVAKYIINQLFGKNYSEKVDNADKLASSIDRYLGSIVYKERSLFENRSIFLKNILLSNIQRDIGNLFPKDKSKLDNLILEYKKLLNVINKTNLILKYQLFYLIYELVWIDSKYENTPSDTRNPTHTIFDHLYATAAMMNWILSLEKEAKGYLLGIDTIGVADFISKGRKTRDLWISSYLVSALLWYVITWFIEEYGPDVILFPSLRFNQFYAFYLLEKLRKEGVSEDVIDEIKELITKYIFNGDDLFENLKIPPYPIIPGRITLILPGLIREGEEYKKVQDDNCFISKVKERYNEGWRKLIEGLRCYSERKREDGFWNLVCRVLKLTEDLLQTTPLNIRVKQVSVTEDEIFNNNKLRSDSWKIYDNKYRQLVSEFKKSKLVKVTPESRLKLFELTKFDKLPQIGEKSKRGYEFCTSCGVLPAVVIMPKEDELEKKLIDLGIARDEKDVRSIKNMISPGERLCPWCLVKRALGAEPRLMRILLLGDLYSVEKIVNEIVSRDVKIEIPSTSDIASIKTFEEMIEKKNEICEDLKEEEVCEKPSESVLSMWQWFNKNYYNGINLTIDPEEYWFSEKRRRYYFSVFRRHRITFPSPYYALVRADSDYLGDLLEGKLTPYLAGIIDSGDYANISEKKEEVNKLLEEYLVNAGSGSIVDYVKTVLKCIRENLNKCSCAEKIYSNEVAKVMFRVNVEKANVEEEVKNSLEYFETILNEGRIIVTPAWHVSISSALNRGLLVELELVNKHKGFVIYAGGDDLLAMLPVDEVLDFIKESRRAFAGFGTEKLGNMCLENGFVRINNAYYPSLPIVGRSYSVIIAHYADPLFFVINDSYNLLEEGKEIIRYRVMYNGEYKDAKKDVAIFRYQGLTSVIPLSLKRPIVSSVSDFNEIASIIDVILELKKRIDEGRISVSLLYDYEKYKHLIVASDEKYLTEFLVKDWIKRNSLRKHVEFTIDEKLYGVRLTIENYPIKIPNDLISNIVYTLRIIYGGEK
CRISPR-associated protein Cmrx L 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx M 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx N 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx O 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx P 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx Q 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx R 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx S 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx T 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx W 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx X 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Cognate target RNA u 46 NA UGUUAAGUCUGGUUUCCCUCCAGGGUAUCUAAGCUUUGAAAAAAAA
crRNA v 51 NA AUUGAAAGUUCAAAGCUUAGAUACCCUGGAGGGAAACCAGACUUAACACCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-08-09
Deposition Author(s): Montoya, G. , Sofos, N. , Stella, S.