PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6SHB

Cryo-em structure of the type iii-b cmr-beta bound to cognate target rna and amppnp, state 1, in the presence of ssdna

PDB DOI: 10.2210/pdb6shb/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Sulfolobus Islandicus Rey15A , Synthetic Construct

Deposited: 2019-08-06
Deposition Author(s): Montoya, G. , Sofos, N. , Stella, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.07 Å

6shb
Literature

Cryo-em structure of the type iii-b cmr-beta bound to cognate target rna and amppnp, state 1, in the presence of ssdna

Montoya, G. , Sofos, N. , Stella, S.

Primary Citation of Related Structures: 6SHB


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated protein, Cmr5 family A 155 Sulfolobus Islandicus Rey15A , Synthetic Construct MLYEEDYKLALEAFKKVFNALTHYGAKQAFRSRARDLVEEIYNSGFIPTFFYIISKAELNSDSLDSLISLFSSDNAILRGSDENVSYSAYLFIILYYLIKRGIIEQKFLIQALRCEKTRLDLIDKLYNLAPIISAKIRTYLLAIKRLSEALIEAR
CRISPR-associated protein, Cmr5 family B 155 Sulfolobus Islandicus Rey15A , Synthetic Construct MLYEEDYKLALEAFKKVFNALTHYGAKQAFRSRARDLVEEIYNSGFIPTFFYIISKAELNSDSLDSLISLFSSDNAILRGSDENVSYSAYLFIILYYLIKRGIIEQKFLIQALRCEKTRLDLIDKLYNLAPIISAKIRTYLLAIKRLSEALIEAR
CRISPR-associated protein, Cmr5 family C 155 Sulfolobus Islandicus Rey15A , Synthetic Construct MLYEEDYKLALEAFKKVFNALTHYGAKQAFRSRARDLVEEIYNSGFIPTFFYIISKAELNSDSLDSLISLFSSDNAILRGSDENVSYSAYLFIILYYLIKRGIIEQKFLIQALRCEKTRLDLIDKLYNLAPIISAKIRTYLLAIKRLSEALIEAR
CRISPR-associated RAMP protein, Cmr4 family D 286 Sulfolobus Islandicus Rey15A , Synthetic Construct MPYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLKSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSVLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI
CRISPR-associated RAMP protein, Cmr4 family E 286 Sulfolobus Islandicus Rey15A , Synthetic Construct MPYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLKSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSVLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI
CRISPR-associated RAMP protein, Cmr4 family F 286 Sulfolobus Islandicus Rey15A , Synthetic Construct MPYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLKSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSVLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI
CRISPR-associated RAMP protein, Cmr4 family G 286 Sulfolobus Islandicus Rey15A , Synthetic Construct MPYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLKSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSVLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI
CRISPR-associated RAMP protein, Cmr6 family I 296 Sulfolobus Islandicus Rey15A , Synthetic Construct MAIDFLVNILELIKEKQCNINLFSAISLTSIVYNNFGEFLSNNQSYSTNNPLLKYHIIILNDKNKTKDVEEKRNIFKREVAELISRNFKLDGEKVRNYFDSLKEVLKSLKYTIVDVEITTRTRALIGVSTSLGKLIFGSGISFDPYMNLPYIPASEIKGIVRSYIEGKLGEQEAEEIFGNEEREGNVNFTDAYPTRSKDFLFVPDVITPHYNGKKSEADAEPRPVIHLTIAPKVTFRFLIYYKREDVGKPICDSMPIILIRGLGARSSVGYSLFELRKIEVIKAAAHHHHHHHHHH
Cmr1,CRISPR-associated RAMP protein, Cmr1 family J 476 Sulfolobus Islandicus Rey15A , Synthetic Construct MEELLMSLKLKALYPLTGGYNRHSINPFYEELVRPTEIKGLWRWWNRVLFNTLAYSTKGKLYTYESIDRLFEDVFGSENKKSAVRLEVITDEGNDNRFELSYVELDKVIDCLRNYKRKVSLDFIDNTLIAEIEGSTKIPISFKSNLDIDKIIKDLVHNNKLLSFELLGFKSVEIDATKISDKKILKEILRDLITNYLEYFNIKQEVTFTLNIYLDKSREHKQNFEDKLKFALYSLLVFILLGGIGRKTSRGFGSLSIIDVKCYDNSICKKIEDLAKNFLKISSGNELKSKIESILDCIKNSCIDTLYIENNILSEIDPKKNVVYFINSDLFEVKRINDKEKVLANIYKAVSSEGCCIKSIITDKYVRKSFLIAFGGYRKVEKDKGLDIGFIKNYLCETCETVSSFNIVDFLLSEGSFMSDYILQYEHRNSLLRFKLISDNSNNSYLIGYILHSSYFKKIDIKYVRCILEKLTYCVI
CRISPR-associated protein Cmrx L 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx M 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx N 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx O 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx P 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx Q 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx R 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx S 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx T 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx W 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx X 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx Z 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmrx Y 174 Sulfolobus Islandicus Rey15A , Synthetic Construct MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein, Cmr2 family K 1037 Sulfolobus Islandicus Rey15A , Synthetic Construct MSIDNVLREFLDYKIIALLHDPPNKAWVITGRARNLTQQLSNIRASRKHEKVAKYIINQLFGKNYSEKVDNADKLASSIDRYLGSIVYKERSLFENRSIFLKNILLSNIQRDIGNLFPKDKSKLDNLILEYKKLLNVINKTNLILKYQLFYLIYELVWIDSKYENTPSDTRNPTHTIFDHLYATAAMMNWILSLEKEAKGYLLGIDTIGVADFISKGRKTRDLWISSYLVSALLWYVITWFIEEYGPDVILFPSLRFNQFYAFYLLEKLRKEGVSEDVIDEIKELITKYIFNGDDLFENLKIPPYPIIPGRITLILPGLIREGEEYKKVQDDNCFISKVKERYNEGWRKLIEGLRCYSERKREDGFWNLVCRVLKLTEDLLQTTPLNIRVKQVSVTEDEIFNNNKLRSDSWKIYDNKYRQLVSEFKKSKLVKVTPESRLKLFELTKFDKLPQIGEKSKRGYEFCTSCGVLPAVVIMPKEDELEKKLIDLGIARDEKDVRSIKNMISPGERLCPWCLVKRALGAEPRLMRILLLGDLYSVEKIVNEIVSRDVKIEIPSTSDIASIKTFEEMIEKKNEICEDLKEEEVCEKPSESVLSMWQWFNKNYYNGINLTIDPEEYWFSEKRRRYYFSVFRRHRITFPSPYYALVRADSDYLGDLLEGKLTPYLAGIIDSGDYANISEKKEEVNKLLEEYLVNAGSGSIVDYVKTVLKCIRENLNKCSCAEKIYSNEVAKVMFRVNVEKANVEEEVKNSLEYFETILNEGRIIVTPAWHVSISSALNRGLLVELELVNKHKGFVIYAGGDDLLAMLPVDEVLDFIKESRRAFAGFGTEKLGNMCLENGFVRINNAYYPSLPIVGRSYSVIIAHYADPLFFVINDSYNLLEEGKEIIRYRVMYNGEYKDAKKDVAIFRYQGLTSVIPLSLKRPIVSSVSDFNEIASIIDVILELKKRIDEGRISVSLLYDYEKYKHLIVASDEKYLTEFLVKDWIKRNSLRKHVEFTIDEKLYGVRLTIENYPIKIPNDLISNIVYTLRIIYGGEK
CRISPR-associated protein, Cmr3 family H 313 Sulfolobus Islandicus Rey15A , Synthetic Construct MKRVLIKPLEPLMFRSQGEFEPLITGSHTAAQSLIIPRPSTIAGMLGYILFNKSSGTGDWLSDLTNLLATIYGTFIETNGEYLFPLRMGNHLALVDQQHLINLPTLLEKEYERREKGIYELFYDKNKLFQIINHQDRIGISIDKSTRTVKEHYLYSARYLAFKKEVNYVIFIDNDAISDKINGKIVNFGGENRIAKLEVDDYKVDTSIEEEYYLALSPILIPDEALDNFLDNISDYVAMGKVDKISLGFDIANTKRKEMLTAILEGSIVKRSIIDFIKNEIKNDLRYRFSKYEKIGYNTLMSLCKLALRKILS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Cognate target RNA (43-MER) u 46 NA UGUUAAGUCUGGUUUCCCUCCAGGGUAUCUAAGCUUUGAAAAAAAA
crRNA (49-MER) v 51 NA AUUGAAAGUUCAAAGCUUAGAUACCCUGGAGGGAAACCAGACUUAACACCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-08-06
Deposition Author(s): Montoya, G. , Sofos, N. , Stella, S.