6SA1
Post catalytic complex of prim-polc from mycobacterium smegmatis with gapped dna and 3'-dutp
PDB DOI: 10.2210/pdb6sa1/pdb
Classification: TRANSFERASE Organism(s): Epstein-Barr Virus Strain Ag876 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2019-07-15 Deposition Author(s): Brissett, N.C. , Doherty, A.J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.01 Å
Post catalytic complex of prim-polc from mycobacterium smegmatis with gapped dna and 3'-dutp
Brissett, N.C. , Doherty, A.J.
Primary Citation of Related Structures: 6SA1
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA polymerase LigD, polymerase domain | A | 350 | Epstein-Barr Virus Strain Ag876 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MMASAATELDVDGVKVRFTNPDKVYFPKLGKNGTKGKLVEYYLSVASGPMLALLRDRPVHLQRFPDGIEGEEIYQKRVPQKHPDYLETCVVTFPSGRTADALKITHPSSIIWAAQMGTVTLHPWQVRCPDTEHPDELRVDLDPQPGTGFKEARTVACDVLKPLLDELGLVGYPKTSGGRGVHVFLRIKPQWDFIEVRRAGIALAREVERRAPDAVTTSWWKEERGERLFIDYNQNARDRTFASAYSVRKTPIATVSMPLSWDELRNADPDDYTMNTVPDLLAGRDDPWADIDSVQQSLGPLLDLVAADEERGLGDLPYPPNYPKMPGEPPRVQPSKKVAEHWDEQGNRKQ |
| DNA polymerase LigD, polymerase domain | D | 350 | Epstein-Barr Virus Strain Ag876 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MMASAATELDVDGVKVRFTNPDKVYFPKLGKNGTKGKLVEYYLSVASGPMLALLRDRPVHLQRFPDGIEGEEIYQKRVPQKHPDYLETCVVTFPSGRTADALKITHPSSIIWAAQMGTVTLHPWQVRCPDTEHPDELRVDLDPQPGTGFKEARTVACDVLKPLLDELGLVGYPKTSGGRGVHVFLRIKPQWDFIEVRRAGIALAREVERRAPDAVTTSWWKEERGERLFIDYNQNARDRTFASAYSVRKTPIATVSMPLSWDELRNADPDDYTMNTVPDLLAGRDDPWADIDSVQQSLGPLLDLVAADEERGLGDLPYPPNYPKMPGEPPRVQPSKKVAEHWDEQGNRKQ |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*GP*CP*GP*AP*GP*CP*G)-3') | b | 7 | NA | GCGAGCG |
| DNA (5'-D(P*GP*CP*GP*AP*GP*CP*G)-3') | e | 7 | NA | GCGAGCG |
| DNA (5'-D(*CP*GP*CP*TP*CP*GP*CP*AP*AP*CP*GP*CP*A)-3') | c | 15 | NA | CGCTCGCAACGCACG |
| DNA (5'-D(*CP*GP*CP*TP*CP*GP*CP*AP*AP*CP*GP*CP*A)-3') | f | 15 | NA | CGCTCGCAACGCACG |
| DNA (5'-D(P*TP*GP*CP*GP*(DUI))-3') | h | 7 | NA | CGTGCGX |
| DNA (5'-D(P*TP*GP*CP*GP*(DUI))-3') | g | 7 | NA | CGTGCGX |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2019-07-15 Deposition Author(s): Brissett, N.C. , Doherty, A.J.