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FASTA Sequence PDB Format mmCIF Format
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6S8E

Cryo-em structure of the type iii-b cmr-beta complex bound to non-cognate target rna

PDB DOI: 10.2210/pdb6s8e/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2019-07-09
Deposition Author(s): Montoya, G. , Sofos, N. , Stella, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

6s8e
Literature

Cryo-em structure of the type iii-b cmr-beta complex bound to non-cognate target rna

Montoya, G. , Sofos, N. , Stella, S.

Primary Citation of Related Structures: 6S8E


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated protein, Cmr5 family A 155 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MLYEEDYKLALEAFKKVFNALTHYGAKQAFRSRARDLVEEIYNSGFIPTFFYIISKAELNSDSLDSLISLFSSDNAILRGSDENVSYSAYLFIILYYLIKRGIIEQKFLIQALRCEKTRLDLIDKLYNLAPIISAKIRTYLLAIKRLSEALIEAR
CRISPR-associated protein, Cmr5 family B 155 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MLYEEDYKLALEAFKKVFNALTHYGAKQAFRSRARDLVEEIYNSGFIPTFFYIISKAELNSDSLDSLISLFSSDNAILRGSDENVSYSAYLFIILYYLIKRGIIEQKFLIQALRCEKTRLDLIDKLYNLAPIISAKIRTYLLAIKRLSEALIEAR
CRISPR-associated protein, Cmr5 family C 155 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MLYEEDYKLALEAFKKVFNALTHYGAKQAFRSRARDLVEEIYNSGFIPTFFYIISKAELNSDSLDSLISLFSSDNAILRGSDENVSYSAYLFIILYYLIKRGIIEQKFLIQALRCEKTRLDLIDKLYNLAPIISAKIRTYLLAIKRLSEALIEAR
CRISPR-associated RAMP protein, Cmr4 family D 286 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MPYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLKSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSVLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI
CRISPR-associated RAMP protein, Cmr4 family E 286 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MPYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLKSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSVLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI
CRISPR-associated RAMP protein, Cmr4 family F 286 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MPYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLKSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSVLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI
CRISPR-associated RAMP protein, Cmr4 family G 286 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MPYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLKSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSVLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI
CRISPR-associated protein, Cmr3 family H 313 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MKRVLIKPLEPLMFRSQGEFEPLITGSHTAAQSLIIPRPSTIAGMLGYILFNKSSGTGDWLSDLTNLLATIYGTFIETNGEYLFPLRMGNHLALVDQQHLINLPTLLEKEYERREKGIYELFYDKNKLFQIINHQDRIGISIDKSTRTVKEHYLYSARYLAFKKEVNYVIFIDNDAISDKINGKIVNFGGENRIAKLEVDDYKVDTSIEEEYYLALSPILIPDEALDNFLDNISDYVAMGKVDKISLGFDIANTKRKEMLTAILEGSIVKRSIIDFIKNEIKNDLRYRFSKYEKIGYNTLMSLCKLALRKILS
CRISPR-associated RAMP protein, Cmr6 family I 296 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAIDFLVNILELIKEKQCNINLFSAISLTSIVYNNFGEFLSNNQSYSTNNPLLKYHIIILNDKNKTKDVEEKRNIFKREVAELISRNFKLDGEKVRNYFDSLKEVLKSLKYTIVDVEITTRTRALIGVSTSLGKLIFGSGISFDPYMNLPYIPASEIKGIVRSYIEGKLGEQEAEEIFGNEEREGNVNFTDAYPTRSKDFLFVPDVITPHYNGKKSEADAEPRPVIHLTIAPKVTFRFLIYYKREDVGKPICDSMPIILIRGLGARSSVGYSLFELRKIEVIKAAAHHHHHHHHHH
Cmr1,CRISPR-associated RAMP protein, Cmr1 family,CRISPR-associated RAMP protein, Cmr1 family J 476 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MEELLMSLKLKALYPLTGGYNRHSINPFYEELVRPTEIKGLWRWWNRVLFNTLAYSTKGKLYTYESIDRLFEDVFGSENKKSAVRLEVITDEGNDNRFELSYVELDKVIDCLRNYKRKVSLDFIDNTLIAEIEGSTKIPISFKSNLDIDKIIKDLVHNNKLLSFELLGFKSVEIDATKISDKKILKEILRDLITNYLEYFNIKQEVTFTLNIYLDKSREHKQNFEDKLKFALYSLLVFILLGGIGRKTSRGFGSLSIIDVKCYDNSICKKIEDLAKNFLKISSGNELKSKIESILDCIKNSCIDTLYIENNILSEIDPKKNVVYFINSDLFEVKRINDKEKVLANIYKAVSSEGCCIKSIITDKYVRKSFLIAFGGYRKVEKDKGLDIGFIKNYLCETCETVSSFNIVDFLLSEGSFMSDYILQYEHRNSLLRFKLISDNSNNSYLIGYILHSSYFKKIDIKYVRCILEKLTYCVI
CRISPR-associated protein, Cmr2 family K 1037 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSIDNVLREFLDYKIIALLHDPPNKAWVITGRARNLTQQLSNIRASRKHEKVAKYIINQLFGKNYSEKVDNADKLASSIDRYLGSIVYKERSLFENRSIFLKNILLSNIQRDIGNLFPKDKSKLDNLILEYKKLLNVINKTNLILKYQLFYLIYELVWIDSKYENTPSDTRNPTHTIFDHLYATAAMMNWILSLEKEAKGYLLGIDTIGVADFISKGRKTRDLWISSYLVSALLWYVITWFIEEYGPDVILFPSLRFNQFYAFYLLEKLRKEGVSEDVIDEIKELITKYIFNGDDLFENLKIPPYPIIPGRITLILPGLIREGEEYKKVQDDNCFISKVKERYNEGWRKLIEGLRCYSERKREDGFWNLVCRVLKLTEDLLQTTPLNIRVKQVSVTEDEIFNNNKLRSDSWKIYDNKYRQLVSEFKKSKLVKVTPESRLKLFELTKFDKLPQIGEKSKRGYEFCTSCGVLPAVVIMPKEDELEKKLIDLGIARDEKDVRSIKNMISPGERLCPWCLVKRALGAEPRLMRILLLGDLYSVEKIVNEIVSRDVKIEIPSTSDIASIKTFEEMIEKKNEICEDLKEEEVCEKPSESVLSMWQWFNKNYYNGINLTIDPEEYWFSEKRRRYYFSVFRRHRITFPSPYYALVRADSDYLGDLLEGKLTPYLAGIIDSGDYANISEKKEEVNKLLEEYLVNAGSGSIVDYVKTVLKCIRENLNKCSCAEKIYSNEVAKVMFRVNVEKANVEEEVKNSLEYFETILNEGRIIVTPAWHVSISSALNRGLLVELELVNKHKGFVIYAGGDDLLAMLPVDEVLDFIKESRRAFAGFGTEKLGNMCLENGFVRINNAYYPSLPIVGRSYSVIIAHYADPLFFVINDSYNLLEEGKEIIRYRVMYNGEYKDAKKDVAIFRYQGLTSVIPLSLKRPIVSSVSDFNEIASIIDVILELKKRIDEGRISVSLLYDYEKYKHLIVASDEKYLTEFLVKDWIKRNSLRKHVEFTIDEKLYGVRLTIENYPIKIPNDLISNIVYTLRIIYGGEK
CRISPR-associated protein Cmr7 X 174 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmr7 T 174 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmr7 W 174 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmr7 L 174 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmr7 M 174 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmr7 O 174 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmr7 P 174 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmr7 N 174 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmr7 Q 174 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmr7 R 174 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ
CRISPR-associated protein Cmr7 S 174 Sicarius Dolichocephalus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQSNDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVKEDIKELFSYYALEQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Non-cognate target RNA u 50 NA UGUUAAGUCUGGUUUCCCUCCAGGGUAUCUAAGCUUUGAACUUUCAAUAA
crRNA v 51 NA AUUGAAAGUUCAAAGCUUAGAUACCCUGGAGGGAAACCAGACUUAACACCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-07-09
Deposition Author(s): Montoya, G. , Sofos, N. , Stella, S.