6RDC
Cryoem structure of polytomella f-atp synthase, primary rotary state 2, composite map
PDB DOI: 10.2210/pdb6rdc/pdb
Classification: PROTON TRANSPORT Organism(s): Alcyonium
Deposited: 2019-04-12 Deposition Author(s): Klusch, N. , Kuhlbrandt, W. , Murphy, B.J. , Yildiz, O.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.2 Å
Cryoem structure of polytomella f-atp synthase, primary rotary state 2, composite map
Klusch, N. , Kuhlbrandt, W. , Murphy, B.J. , Yildiz, O.
Primary Citation of Related Structures: 6RDC
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| ASA-10: Polytomella F-ATP synthase associated subunit 10 | 0 | 82 | Alcyonium | MSYSAYFAKAGFQFPAGLSALVAGIVALNVCTGRPTKGTKEISNAEYNATPIGYLQSPDQHPTAFPKVPGMKDVHGSPHHHH |
| ASA-9: Polytomella F-ATP synthase associated subunit 9 | 9 | 97 | Alcyonium | MAVTSFLGKAFEKYFYDFSAYEQFGLNRFLSSKGQYVALRHVGFVMVGVNVLLAANFPFNPPFPTIGMCPAGWEGTWVCQADKAKALEMYKEWKKSN |
| Mitochondrial ATP synthase subunit c | A | 127 | Alcyonium | MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA |
| Mitochondrial ATP synthase subunit c | B | 127 | Alcyonium | MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA |
| Mitochondrial ATP synthase subunit c | C | 127 | Alcyonium | MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA |
| Mitochondrial ATP synthase subunit c | D | 127 | Alcyonium | MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA |
| Mitochondrial ATP synthase subunit c | E | 127 | Alcyonium | MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA |
| Mitochondrial ATP synthase subunit c | F | 127 | Alcyonium | MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA |
| Mitochondrial ATP synthase subunit c | G | 127 | Alcyonium | MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA |
| Mitochondrial ATP synthase subunit c | H | 127 | Alcyonium | MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA |
| Mitochondrial ATP synthase subunit c | I | 127 | Alcyonium | MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA |
| Mitochondrial ATP synthase subunit c | J | 127 | Alcyonium | MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA |
| Mitochondrial ATP synthase subunit 6 | M | 327 | Alcyonium | MSVLSSVSMGSRIGSSLLGRSSAYLAQCGFSTRSNLNGSIDTSSSVFQALSSDNENKPAASPLNVKLPGMSCSSILLPKTSRIAVPFGNQTMAMSSVRDVKTGSLPTNFLTGVYRFWRSQNPAEKPHDPVNDRLLPAVVDASDKRASIGTWATTFFCTIISCNLLGLMPFNEAPTSGLGFATGLGVSVWATATILGLSKTGFKFPGHFIPGGTPWPMAFIFVPLETISYTFRAVSLGVRLWVNMLAGHTLLHILTGMALALPFSLGFFSMVPATFGVCCLLSALVGLEYLVAVLQSGVFSILSTVYVGEFNHDKFIGPAAKIVKKIH |
| Mitochondrial ATP synthase subunit OSCP | P | 229 | Alcyonium | MLARVASVALRRAEGKIMPQMVRALSVSAASAAQAELKLPTAPLQLSGTSAQIATLLWQVAAKENQLDKVQDELYQFIELFKQHSELRRLATDPFVPTLVRTKIISSVLKDSGASEITKKLFEALADEGALSALLEVTVNYEELMLAHKKEVYCTVITAEPLDKLERVELTKKAEKFVDAGFKLVMQEKIDKKLLGGFVIEFSDRRVDMSTAKKVEEFNNFVNKLVLSI |
| epsilon: Polytomella F-ATP synthase epsilon subunit | Q | 74 | Alcyonium | MCAPSGPFYRVAGMSYLRYSNICADLLRNVLKEPFKAKAQARQAIHFRQAPYVDGKAGASKVYELENGIPKTAN |
| Mitochondrial ATP synthase subunit delta | R | 199 | Alcyonium | MFGLKRAVTVGRRFISTSAARMEAAAPAGPKEFTEVWNKKAPSTLIVPEFPSNYTAVKAVGEGQVHGDAFPVNFYTPHSILSQAQKDTVVLPGVDGYFGVKASHVPTIAQLKPGVVELHSGAESEKFFVSGGFAFVHPNGVTDICVLEAATLDQVDPAAVKSALAAASAAQPTDEFEQAANRAAIELYSALESAVEAKA |
| ATP synthase gamma chain, mitochondrial | S | 317 | Alcyonium | MALRKAVLSLGLSQGVAAEAVLGSGMFNAVQHESVRYASNQAVKQRIRAIKNIGKITKAMKMVAASKMKNAQIAVEQSRGLVDPFVRLFGDFPAVNSNKSVVVAVTSDKGLCGGLNSNITKYTRATLATTESEGKDVVVVSIGDKGRSQLTRIESQRYQLAIADTYKVRVTFGQASLIVEELIKHNPQSYQILFNKFRSAISFKPTVATILSPDLLEKQLEDVTGNSLDAYDIEASHERSDVLRDLTEFHLGVTLYNAMLENNCSEHASRMSAMENSTKSAGEMLGKLTLDYNRKRQATITTELIEIIAGASALMDE |
| ATP synthase subunit alpha | T | 562 | Alcyonium | MRSPAAFVARSGLFKASLGQSNWAQKAEQMMASVTRTFAADAKALDELRKPKFSSKYLIQHVSQKLIPAVKEWEKSYQPPVIHLGRVLSVGDGIARVYGLKSVQAGELVCFDSGVKGMALNLQADHVGVVVFGNDSVIHQGDLVYRTGQIVNVPIGPGTLGRVTDGLGQPIDGKGPLTNVRSSLVEVKAPGIIARQSVREPLFTGVKAVDALVPIGRGQRELIIGDRQTGKTAVAIDAIIHQKNCNEQVPKAQRVYCVYVAVGQKRSTVAQLVKLFTQTGAMRYTIMVSATASDAAPLQFLAPYSGCAMAEYFRDTGKHGLIIYDDLSKQSVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSKELGGGSLTAFPVIETQAGDVSAYIATNVISITDGQIFLETELFYKGIRPALNVGLSVSRVGSAAQFPGMKQVAGTLKLELAQYREVAAFAQFGSDLDAATQYVLERGARLTEMLKQKQFAPIPIERQTVAVYAATKGFLDKVRVQDIVAAEEAVISQVNPAVFKILKANGKITPALDAHLKAELRKVKLPGA |
| ATP synthase subunit alpha | U | 562 | Alcyonium | MRSPAAFVARSGLFKASLGQSNWAQKAEQMMASVTRTFAADAKALDELRKPKFSSKYLIQHVSQKLIPAVKEWEKSYQPPVIHLGRVLSVGDGIARVYGLKSVQAGELVCFDSGVKGMALNLQADHVGVVVFGNDSVIHQGDLVYRTGQIVNVPIGPGTLGRVTDGLGQPIDGKGPLTNVRSSLVEVKAPGIIARQSVREPLFTGVKAVDALVPIGRGQRELIIGDRQTGKTAVAIDAIIHQKNCNEQVPKAQRVYCVYVAVGQKRSTVAQLVKLFTQTGAMRYTIMVSATASDAAPLQFLAPYSGCAMAEYFRDTGKHGLIIYDDLSKQSVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSKELGGGSLTAFPVIETQAGDVSAYIATNVISITDGQIFLETELFYKGIRPALNVGLSVSRVGSAAQFPGMKQVAGTLKLELAQYREVAAFAQFGSDLDAATQYVLERGARLTEMLKQKQFAPIPIERQTVAVYAATKGFLDKVRVQDIVAAEEAVISQVNPAVFKILKANGKITPALDAHLKAELRKVKLPGA |
| ATP synthase subunit alpha | V | 562 | Alcyonium | MRSPAAFVARSGLFKASLGQSNWAQKAEQMMASVTRTFAADAKALDELRKPKFSSKYLIQHVSQKLIPAVKEWEKSYQPPVIHLGRVLSVGDGIARVYGLKSVQAGELVCFDSGVKGMALNLQADHVGVVVFGNDSVIHQGDLVYRTGQIVNVPIGPGTLGRVTDGLGQPIDGKGPLTNVRSSLVEVKAPGIIARQSVREPLFTGVKAVDALVPIGRGQRELIIGDRQTGKTAVAIDAIIHQKNCNEQVPKAQRVYCVYVAVGQKRSTVAQLVKLFTQTGAMRYTIMVSATASDAAPLQFLAPYSGCAMAEYFRDTGKHGLIIYDDLSKQSVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSKELGGGSLTAFPVIETQAGDVSAYIATNVISITDGQIFLETELFYKGIRPALNVGLSVSRVGSAAQFPGMKQVAGTLKLELAQYREVAAFAQFGSDLDAATQYVLERGARLTEMLKQKQFAPIPIERQTVAVYAATKGFLDKVRVQDIVAAEEAVISQVNPAVFKILKANGKITPALDAHLKAELRKVKLPGA |
| ATP synthase subunit beta | X | 574 | Alcyonium | MALRYAAGLAKNVVQRQGASLNIARAFAAEPAPAIDAGYVSQVIGPVVDVRFDGELPSILSSLEVEGHSVRLVLEVAQHMGDNTVRCIAMDSTDGLVRGQKVVDTGSPIKVPVGRGTLGRIMNVIGEPVDEQGPIDAADIWSIHREAPEFTEQSTEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGAERGNSKCTLVYGQMNEPPGARARVALTGLTVAEYFRDIEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLNPNVIGAEHYNVARGVQKVLQDYKNLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGTPGKYVDLADTISGFQGVLTGKYDDLPEMAFYMVGDIKEVKEKADKMAKDIASRKEADNKKVSEELKDIPSLDKLVSEIKEVVIEEDDGLEEDFKAEALSSETVVLNEEGKSVPLPKKN |
| ATP synthase subunit beta | Y | 574 | Alcyonium | MALRYAAGLAKNVVQRQGASLNIARAFAAEPAPAIDAGYVSQVIGPVVDVRFDGELPSILSSLEVEGHSVRLVLEVAQHMGDNTVRCIAMDSTDGLVRGQKVVDTGSPIKVPVGRGTLGRIMNVIGEPVDEQGPIDAADIWSIHREAPEFTEQSTEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGAERGNSKCTLVYGQMNEPPGARARVALTGLTVAEYFRDIEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLNPNVIGAEHYNVARGVQKVLQDYKNLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGTPGKYVDLADTISGFQGVLTGKYDDLPEMAFYMVGDIKEVKEKADKMAKDIASRKEADNKKVSEELKDIPSLDKLVSEIKEVVIEEDDGLEEDFKAEALSSETVVLNEEGKSVPLPKKN |
| ATP synthase subunit beta | Z | 574 | Alcyonium | MALRYAAGLAKNVVQRQGASLNIARAFAAEPAPAIDAGYVSQVIGPVVDVRFDGELPSILSSLEVEGHSVRLVLEVAQHMGDNTVRCIAMDSTDGLVRGQKVVDTGSPIKVPVGRGTLGRIMNVIGEPVDEQGPIDAADIWSIHREAPEFTEQSTEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGAERGNSKCTLVYGQMNEPPGARARVALTGLTVAEYFRDIEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLNPNVIGAEHYNVARGVQKVLQDYKNLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGTPGKYVDLADTISGFQGVLTGKYDDLPEMAFYMVGDIKEVKEKADKMAKDIASRKEADNKKVSEELKDIPSLDKLVSEIKEVVIEEDDGLEEDFKAEALSSETVVLNEEGKSVPLPKKN |
| ATP synthase associated protein ASA1 | 1 | 618 | Alcyonium | MMRAAQKAKQELPATVLTQTRSYLAPLRSDFTEEITAPKVASASNLVNEWNNKKQATENLMKLLQAYKDIGDAKSEPLLKNHNPRTFEDRDYPVPDFRTQNLKAGDVPKFFDTVISTRASAAIASKDKFWAGRKTEAEAASAKASAAFPRVAVPEWKKGKTVSIENLNTVTDKYAAALVPKRKLALPVLPEGVKKAVEDFAASVGQAKNASEVSELLAKSLAEKAVVTEGGKVVEGFSYVSKAVAAKVIATRRAEVHERLLKLWAKRLLVSPELAIVPLNEFDAQLASKFEGISPKYQELLSAVAQGNKTFAQRLNSSPAFSSFLLKREKAESEVPPSELELEAAQKAAELEDPEVALRTLLGPQMEALGASDLLLSEQIRVITEHRYTPDRLQYKEGMKLADKIAAQEAALKEELKVIYGDNVDVKHFQASPRTPVQQLFDSLKNAAANKERAAKEAAAAASPYLAYAVTKKQEVQADPSNIPFDEVLYPQLSEELLELELSDIREDEIALEKAEEEELWLLTLTQQFKHIQKHFGIDLPHSVVAHMDPLLIKKIDWETTNALEDFDITLDDMGAEDAKEQWGAENLSHHFLPLIRYRRDLARKNGDRYGPDLVNGN |
| ASA-2: Polytomella F-ATP synthase associated subunit 2 | 2 | 441 | Alcyonium | ENDVPAILKEIDSLVSREAVSAKEVSDAAVALTYLQVKANRRLWGKVLEKAGAAQDYDAASLTNLLWAINTGGVEHFKTVAELAGPAVSLLPSLSPVQLSIVVEALGGAGVKNYELYNKASAVVVSKIGEFKPAEIARVLYGVAFGGVNDVALAKAAGKVFASTEVDSRTAAQALYALAKLGRADKATVDALLKSFKKGTESASDAAAASFALGSLSFKAEKAIVDALKASAGDLAPAQAVEAAYGLALSGATDAEAFKALFGVVAPAIEKAPDALEVSSLAQLHVASTISGAKLPAAVGSFVAKAFGLAADAARLKRSSAESALVADVAAATAVAFGAQYRPEVASAVASYVKTAPDGSVLDIAITKGDAKVLVQAVPSSLLTSTTPAKPLGHVAAYSKVREAQGYAVAVVPANEFEALPDQKAKAQYVLAAIKKVAPSF |
| Mitochondrial F1F0 ATP synthase associated 32 kDa protein | 3 | 325 | Alcyonium | MRQASRLALSIRQAGNVEAASAVPAMTRQFSAPGSHEHHETPLSKVMPTVVSIPRKVACLALGATKKVVCGLASSGPSQNLVSTFANKVIVEENLVNVAEIDVPFWSYWLSSAGFTSKDAFVKFAEAVKPKVAALSTSDITNLTVAFKRANYYDKDLFTGIEANVSANFTKFETEQLLQIVATFDAFNHSSVAFLDDVADSITYCNHYLAPVRAGADELATLLTYYAKNGHERADLLATVARGFSEVSLGKLSAAQRKDTVLSALKAFQTFGFYPESIEAVIGAALVSPAEYSAEELKEVEAVKVAAENALGGEFVLIQEGAHGH |
| Mitochondrial ATP synthase associated protein ASA4 | 4 | 294 | Alcyonium | ATEPAVSKKEVLYFLSSKDAESSTAVKSYLKSLYAGAQVEATETDASELIAQLEKKYLSAQVVEPGVHNIALPLGESGSAPVKRYAAELFNLGAQAGFECPFIEVSKKFGQETATSETVKDVLNKTKSYVSADYNAALNEVLSSVEAEINGPVLFDGKTEGFKKFAAKAKAVAVSRGLPADTILAYCAGSANEDAADKVSKEFFTWFESAYTADAAAEVKAIEAEAASILDRHLAKPVAQIRKEQASAYASLLKRAETAKGAKWAEKYLEDVKAVQWFDASVAEAPASGPKVAA |
| Mitochondrial F1F0 ATP synthase associated 14 kDa protein | 5 | 123 | Alcyonium | MKLLPESLQQEAATAAVVASWVLWHLDTQLLPTIMREHKLHACWAAAAKRYNEKLFKLNPSYDRVLSLPAVSKNQVLENVFHTAPKAPVEHLEKMVSANSKVYDALNLQSKRVLIWQVKPALF |
| Mitochondrial ATP synthase subunit ASA6 | 6 | 151 | Alcyonium | MMLRTLTRSSAVAGQAVRLFKTSAAAAEGNSVAGIIKSVNETSGANLLSSLKTIKAQAAPIYPAAASSTGYSTQAKIALFGALSWILYRADGQSKAHEWIVDLNLNVLQAAWLISFSSLIPFRAVYFAFRGMAPATASTLNGLKTFSSISL |
| Mitochondrial ATP synthase associated protein ASA7 | 7 | 190 | Alcyonium | MSSVRAGVEAGRRDLTTFTFSGLQDAPVAALSGSIKLNVAAKAGKAEVTVAAGAAKAATQVSAAALRKLSGSKISLAEVARISVLHSSIQNYLLSLSNERYQLLSQWPDFTTMYGKDFYYRAHPEDLKKFYDAADEYYKLYETVTEFDSLSALASQVVPNYAARRRSTVHPAIGSTVADGAFTNFLLSKQ |
| Mitochondrial ATP synthase subunit ASA8 | 8 | 89 | Alcyonium | MVLGEVYLKDILRTPPTGAIPANVPHPFQTSFYTYATKKLIPRHWYLLGGFTFTITLYGILDGLRDSGKKKAYDEAIHAGKTPYTAGGH |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-04-12 Deposition Author(s): Klusch, N. , Kuhlbrandt, W. , Murphy, B.J. , Yildiz, O.