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6RAP

Cryo-em structure of the anti-feeding prophage cap (afp tube terminating cap)

PDB DOI: 10.2210/pdb6rap/pdb

Classification: VIRUS LIKE PARTICLE
Organism(s): Serratia Entomophila

Deposited: 2019-04-07
Deposition Author(s): Desfosses, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Literature

Cryo-em structure of the anti-feeding prophage cap (afp tube terminating cap)

Desfosses, A.

Primary Citation of Related Structures: 6RAP


Proteins
Molecule Chains Sequence Length Organism Sequence
Afp1 B 149 Serratia Entomophila MAITADDIAVQYPIPTYRFIVTLGDEQVPFTSASGLDINFDTIEYRDGTGNWFKMPGQRQAPNITLSKGVFPGKNAMYEWINAIQLNQVEKKDIMISLTNEAGTEVLVSWNVSNAFPTSLTSPSFDATSNEIAVQQITLMADRVTIQTA
Afp1 A 149 Serratia Entomophila MAITADDIAVQYPIPTYRFIVTLGDEQVPFTSASGLDINFDTIEYRDGTGNWFKMPGQRQAPNITLSKGVFPGKNAMYEWINAIQLNQVEKKDIMISLTNEAGTEVLVSWNVSNAFPTSLTSPSFDATSNEIAVQQITLMADRVTIQTA
Afp2 C 354 Serratia Entomophila MTVTTTYPGVYLSEDAVSSFSVNSAATAVPLFAYDSENTNTINKPIQVFRNWAEFTVEYPTPLEDAFYTSLSLWFMHGGGKCYLVNEANIADAVAQYDDITLIVAAGTDTTTYTAFTTVVGQGYRIFGLFDGPKEKIAGTAKPDEVMEEYPTSPFGAVFYPWGTLASGAAVPPSAIAAASITQTDRTRGVWKAPANQAVNGVTPAFAVSDDFQGKYNQGKALNMIRTFSGQGTVVWGARTLEDSDNWRYIPVRRLFNAVERDIQKSLNKLVFEPNSQPTWQRVKAAVDSYLHSLWQQGALAGNTPADAWFVQVGKDLTMTQEEINQGKMIIKIGLAAVRPAEFIILQFSQDIAQ
Afp3 D 451 Serratia Entomophila MATVTSVPGVYIEEDASPAMSVSASATAVPLFVARFTPLKPELAGVITRIGSWLDYTILFDSNVPSSARVTVSSTAVEPSPEFDALETASSKATTTYTYQIDDTEVVDPTASVALRLYFQNGGGPCYLYPLEKADDNGPLAALPDLIDEVGEITLLASPDPDETYRTAVYGALAASLDQHKGYFLLADSVNGDAPSAVGGSAQVAVYYPNVEVPHTRKLDDAEVAIDGYLDDEGKAVTTLAALRVVNTEFAGEIAQSLSGDLSAPLSLPPSALIAGVYGKTDGERGVWKAPANVVLNGVSDVSVRVTNEQQAELNPKGINVIRHFSDRGLVVWGSRTQKDDDDWRYIPVRRLFDAAERDIKKALQPMVFEPNSQLTWKRVQTAIDNYLYRLWQQGALAGNKAEEAYFVRVGKGITMTQDEINQGKMIIQVGMAAVRPAEFIILKFTQDMSQ
Afp16 E 295 Serratia Entomophila MSMSNYQTLVDVNNAMNKMLRAYVNEAVAIRFDLPDVDATQADAAISVFLYDIHEDLQLRTAESRGFNAGAGRLLPGWVNVKCNYLITYWESTGPATDADNPDSQPDNQAIQVMSQVLAALINNRQLADIPGAYTQVMPPKENLNSLGNFWQSLGNRPRLSLNYCVTVPISLSDKGEEMTPVKSLSTTVEPKAPLSPLVITDALREQLRVALGGDYDACLAMTHVNLDSSPVANSDGSAAEIRVSLRVYGMTPTEYLAPMNTVFNEWEKSEAAAVTPDGYRVYINAVDKTDLTGI
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-04-07
Deposition Author(s): Desfosses, A.