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6QZK

Structure of clostridium butyricum argonaute bound to a guide dna (5' deoxycytidine) and a 19-mer target dna

PDB DOI: 10.2210/pdb6qzk/pdb

Classification: HYDROLASE
Organism(s): Clostridium Butyricum , Synthetic Construct

Deposited: 2019-03-11
Deposition Author(s): Hegge, J.W. , Jinek, M. , Swarts, D.C. , Van Der Oost, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.548 Å

6qzk
Literature

Structure of clostridium butyricum argonaute bound to a guide dna (5' deoxycytidine) and a 19-mer target dna

Hegge, J.W. , Jinek, M. , Swarts, D.C. , Van Der Oost, J.

Primary Citation of Related Structures: 6QZK


Proteins
Molecule Chains Sequence Length Organism Sequence
Clostridium butyricum Argonaute A 748 Clostridium Butyricum , Synthetic Construct ANNLTFEAFEGIGQLNELNFYKYRLIGKGQIDNVHQAIWSVKYKLQANNFFKPVFVKGEILYSLDELKVIPEFENVEVILDGNIILSISENTDIYKDVIVFYINNALKNIKDITNYRKYITKNTDEIICKSILTTNLKYQYMKSEKGFKLQRKFKISPVVFRNGKVILYLNCSSDFSTDKSIYEMLNDGLGVVGLQVKNKWTNANGNIFIEKVLDNTISDPGTSGKLGQSLIDYYINGNQKYRVEKFTDEDKNAKVIQAKIKNKTYNYIPQALTPVITREYLSHTDKKFSKQIENVIKMDMNYRYQTLKSFVEDIGVIKELNNLHFKNQYYTNFDFMGFESGVLEEPVLMGANGKIKDKKQIFINGFFKNPKENVKFGVLYPEGCMENAQSIARSILDFATAGKYNKQENKYISKNLMNIGFKPSECIFESYKLGDITEYKATARKLKEHEKVGFVIAVIPDMNELEVENPYNPFKKVWAKLNIPSQMITLKTTEKFKNIVDKSGLYYLHNIALNILGKIGGIPWIIKDMPGNIDCFIGLAVGTREKGIHFPACSVLFDKYGKLINYYKPTIPQSGEKIAETILQEIFDNVLISYKEENGEYPKNIVIHRAGFSRENIDWYKEYFDKKGIKFNIIEVKKNIPVKIAKVVGSNICNPIKGSYVLKNDKAFIVTTDIKDGVASPNPLKIEKTYGDVEMKSILEQIYSLSQIHVGSTKSLRLPITTGYADKICKAIEYIPQGVVDNRLFFL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
siDNA guide (5'-D(P*CP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3') b 21 NA CGAGGTAGTAGGTTGTATAGT
DNA target (5'-D(T*AP*TP*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*T)-3') c 19 NA TATACAACCTACTACCTCT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-03-11
Deposition Author(s): Hegge, J.W. , Jinek, M. , Swarts, D.C. , Van Der Oost, J.