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FASTA Sequence PDB Format mmCIF Format
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6QLD

Structure of inner kinetochore ccan-cenp-a complex

PDB DOI: 10.2210/pdb6qld/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium

Deposited: 2019-01-31
Deposition Author(s): Barford, D. , Chang, L. , Fasci, D. , Heck, A.J.R. , Mclaughlin, S.H. , Yan, K. , Yang, J. , Zhang, Z.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.15 Å

Literature

Structure of inner kinetochore ccan-cenp-a complex

Barford, D. , Chang, L. , Fasci, D. , Heck, A.J.R. , Mclaughlin, S.H. , Yan, K. , Yang, J. , Zhang, Z.

Primary Citation of Related Structures: 6QLD


Proteins
Molecule Chains Sequence Length Organism Sequence
Inner kinetochore subunit MIF2 C 22 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium LRKSTRVKVAPLQYWRNEKIVY
Inner kinetochore subunit CTF19 P 270 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium QNDITQDFLNLISISSSNPNSAISDRKRVERINGLTNLQKELVTKYDTLPLLNMNLRLSYLRDHTYPHLQVSVQSRDRVHNDGIEVLVVNYKFCRNTMNPFEIQFKMFYKFEDSTLLKWEILRISTNVRLKAKQLLATRNFQKCLLSLYEFDKIKSKKTGIFQNLINLLKRKTRCYLMNNSDSLIVERVIREGRLTTIKLQINFIITMPGERGKPRNCFLPMSKISIALWKGGERFNQIDLDEICYGLIKEYGVKTGLKEICNVCLFPDM
Inner kinetochore subunit OKP1 Q 231 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium SILRLLETNTVSALDSVFEKYEKEMNQMTHGDNNEVKRIYSKKERLLEIILTKIKKKLRQAKFPSRISERDLDIEYIYSKRQFIQNRYSQELQNNERLEAILSREQNLLEETRKLCMNLKTNNKKRLTEKLIQKDLHPVLNKAMEYTYGLESTNGFMHPDGPVTFRNDSHELNLMLNDPIKSTADVRLDKEEVLSLLPSLKEYTKKSKELKETMGQMISDSHEEEIKEVFV
Inner kinetochore subunit AME1 U 190 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium SVTTIDVLSSLFINLFENDLIPQALKDFNKSDDDQFRKLLYKLDLRLFQTISDQMTRDLKDILDINVSNNELCYQLKQVLARKEDLNQQIISVRNEIQELKAGKDWHDLQNEQAKLNDKVKLNKRLNDLTSTLLGKYEGDRKIMSQDSEDDSIRDDSNILDIAHFVDLMDPYNGLLKKINKINENLSNEL
Inner kinetochore subunit NKP1 Y 237 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium TDTYNSISNFIENELTALLSSDDYLMDDLAGELPNEVCRLLKAQVIEKRKDAMSRGKQDLLSKEIYDNESELRASQSQQIMELVGDIPKYSLGSELRNRVEGEPQSTSIERLIEDVLKLPQMEVADEEEVEVENDLKVLSEYSNLRKDLILKCQALQIGESKLSDILSQTNSINSLTTSIKEASEDDDISEYFATYNGKLVVALEEMKLLLEEAVKTFGNSPEKREKIKKILSELKK
Inner kinetochore subunit NKP2 Z 151 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium SEQLLHNYVSDSLLTTLISFQEFKQQLQSYTSDEQQLQHWYELLQARDARVTSELEARIKQFFITLRSRLLRFLESEQLSHSLSLETLIDALYKINDLLQQRLQILDDAIQEKTSELAEFENMVRSPSAGDNAIPGLLQIIQSYINLLEEN
Histone H3-like centromeric protein CSE4 A 90 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium LALYEIRKYQRSTDLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG
Histone H4 B 79 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium DNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG
Histone H4 F 79 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium DNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG
Histone H2B.2 D 93 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSST
Histone H3-like centromeric protein CSE4 E 115 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium VRQKRREKQRKQSLKRVEKKYTPSELALYEIRKYQRSTDLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG
Inner kinetochore subunit MCM16 H 133 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium SSEKQWERIQQLEKEHVEVYRELLITLDRLYLIRKHNHAVILSHTQQRLLEIRHQLQINLEKTALLIRLLEKPDNTNVLFTKLQNLLEESNSLDYELLQSLGAQSSLHKQLIESRAERDELMSKLIELSSKFP
Inner kinetochore subunit CTF3 I 408 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium NSNVLLPRKVMSRDSLKHLYSSIILIKNSRDESSSPYEWCIWQLKRCFAHQIETPQEVIPIIISVSSMDNKLSSRIIQTFCNLKYLKLDELTLKKVCGGILPLWKPELISGTREFFVKFMASIFMWSTRDGHDNNCTFSETCFYVLQMITNWVLDDKLIALGLTLLHDMQSLLTLDKIFNNATSNRFSTMAFISSLDILTQLSKQTKSDYAIQYLIVGPDIMNKVFSSDDPLLLSAACRYLVATKNKLMQYPSTNKFVRMQNQYIMDLTNYLYRNKVLSSKSLFGVSPDFFKQILENLYIPTADFKNAKFFTITGIPALSYICIIILRRLETAENTKIKFTSGIINEETFNNFFRVHHDEIGQHGWIKGVNNIHDLRVKILMHLSNTANPYRDIAAFLFTYLKSLSKY
Inner kinetochore subunit MCM22 K 122 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium VLDVYIKNLENQIGNKRYFLKQAQGAIDEITKRSLDTEGKPVNSEVFTELLRKPMFFSERADPIGFSLTSNFLSLRAQSSSEWLSLMNDQSVDQKAMLLLQNNINSDLKELLRKLQHQMTIM
Inner kinetochore subunit IML3 L 241 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium PYTWKFLGISKQLSLENGIAKLNQLLNLEVDLDIQTIRVPSDPDGGTAADEYIRYEMRLDISNLDEGTYSKFIFLGNSKMEVPMFLCYCGTDNRNEVVLQWLKAEYGVIMWPIKFEQKTMIKLADASIVHVTKENIEQITWFSSKLYFEPETQDKNLRQFSIEIPRESCEGLALGYGNTMHPYNDAIVPYIYNETGMAVERLPLTSVILAGHTKIMRESIVTSTRSLRNRVLAVVLQSIQF
Inner kinetochore subunit CHL4 N 447 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium LRLEDNYVPTSDTLVVFKQLMKLPVTVLYDLTLSWFAKFGGSFDGDIYLLTETLDLLIEKGVRRNVIVNRILYVYWPDGLNVFQLAEIDCHLMISKPEKFKWLPSKALRGDGKPYVVKLQPAKFIENLQTDLAKIYHCHVYMFKHPSLPVLITRIQLFDSNNLFLSTPNIGSINKESLYNKLDKFQGKPLISRRPYYVAFPLNSPIIFHSVDKDIYARLVLQSISRTISERETIIFKPVQKIPVKSIHNIMTLLGPSRFAESMGPWECYASANFERSPLHDYKKHQGLTGKKVMVREFDDSFLNDDENFYGKEEPEIRRLRLEKNMIKFKGSANGVMDQKYNDLKEFNEHVHNIRNGKKNEDSGEPVYISRYSSLVPIEKVGFTLKNEINSRIITIKLKFNGNDIFGGLHELCDKNLINIDKVPGWLAGENGSFSGTIMNGDFQREQ
Inner kinetochore subunit MCM21 O 212 Adineta Vaga , Pseudomonas Chlororaphis Subsp. Piscium STSDRSELEDYIVLENVYRMFGITFFPLVDPIDLKIKDASGEIFVDREMLGIRLEVFSERTSQFEKPHYVLLKKRIKSNSWFLFKHTIPSFIDVQGIFDDTNGGLVISHDDAYLFAKRVFLQLVEVQKRRQIFKDLEAKKIIHDLDLDLESSMVSFFVKDIKVELFVKQNEIVSCSILDDIHDFSQNNKSKWEIALLGSLDDLELKLNHSFA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (125-MER) g 124 NA TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCAC
DNA (125-MER) j 124 NA GTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-01-31
Deposition Author(s): Barford, D. , Chang, L. , Fasci, D. , Heck, A.J.R. , Mclaughlin, S.H. , Yan, K. , Yang, J. , Zhang, Z.