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FASTA Sequence PDB Format mmCIF Format
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6QKL

Mechanism of eif6 release from the nascent 60s ribosomal subunit

PDB DOI: 10.2210/pdb6qkl/pdb

Classification: RIBOSOME
Organism(s): Dictyostelium Discoideum , Homo Sapiens

Deposited: 2019-01-29
Deposition Author(s): Kargas, V. , Warren, A.J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Literature

Mechanism of eif6 release from the nascent 60s ribosomal subunit

Kargas, V. , Warren, A.J.

Primary Citation of Related Structures: 6QKL


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
26S RIBOSOMAL RNA n 3741 NA UCCGCCUCACCUUUGUAAGAUUACCCGCUGAACUUAAGCAUAUCAGUAAGCGGAGGAAAAGAAACUAACUAGGAUUCCGUCAGUAACGGCGAGUGAAGACGGAAUAGCCCAAGGUUCAAACCUGGAUCUCUUCGAGGUUAGGUGAUGUGACCUAUGGACUGAUGGAGCCCGCUGUUGUGACUGCUAAUUCCGUUUGGAAUUUCGAGUCGUAGAAGGUGAUAACCCUGUUCGCAGUAUCACAACAGUUGGACUUUGCCAUUAGCUCCACGAGUAGGAAUGUCUGAAAUUGCAUUCUGAAUGGGUGAUAAGAUUCAUCCAAGGCUAAAUAUAUGUUAGGAGAUCGAUAGCAUACAAGUACCGUGAGGGAAAGGUGAAAAGAACUUUGAAAAAAGGUUUAAAAGUAUUUGACACCGUUUAUGUGGAAGCGUUUACUUGGACCCCGAUUAAUGACGUCGGUUUAGCUCUAAUUCUUAGGUGGCCAAAGUAGAGUGUUACGUGCUGAUCAAAAGGUAACGGACAUUUGAUUCAUUGGUUAUCGACGAGGAAGGUACUCUAAAUCGGCCAGUUACUAACGGGUGAGAUCUGAUGUUUAUAAAAUGGGGGAUGAGGCUUAUCGGCUUGCUGGUGGCUCGCUCUCAAUAAUGGAUAUUGGGUUUCAUCAAGAGUGCAAAAUGGUGGCAAUUCACUAUUAGUGGUUAUUAAUUUUGUUUGCGUGGCUUGGCCUUGUCUACAGGUUAUCUUCGGAUGGCUUGUAGCUUUGUUGAACGCGUGGGCUUAAUGUUGUGAUUCUAGUAGCGUUACCAUAUCGUUAGAGUGGGUUCAAUAAAUGUCCCGUCUUGAAACACGGAUCAAGGAGGCCGUUUUGUGUGCGAGUGUAAGAGUAAUUAAAACUCUGACGCGUAUUGAAAGAAAGAAUACUCCAAAAGAUCGUAACUACGGUUACCUUCUGUAAGGAGUGCCCGAAUCAUGAGAACUCUGUUUCGAAAGGAUUUGCGGUUGAGCACCUAGAAUGGGACCCGAAAGGUUGUGAACUAUGCCUGAGGAAGGCGAAGUCAGGGGAAACUCUGAUGGAGGCUUGUCGCAAUGCUGACGUGCAAAUCGCUUGUCUAACUUGGGUAUAGGGGCGAAAGACUAAUCGAACAACCUAGUAGCUGGUUCCUUCCGAAGUUUCCCUCAGGAUAGCUGGAGCAGUAUUCUAGUUCCAUCUUGUAAAGACAAUGAUUAGCAGUUUCGGGGGCGUAAUGCUCUCAGCUGAUUCUCAAACUCUGAACGGGUGGGUAUCAUUUUAAUUCACUUAAUUGGAUUUUAAAAUUAAAUUGCACAUGUGCAAUGAAAAAUAGGAGCUCUUAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGUGGGUUGAACCAAAUAUUGGGAUAAGACGUCUAACAUUCACUAAUAGAUACCACAAAAGGUGUUAGUUCAUUAAGACAGCAGGACGGUGGCCAUGGAAGUCGGUAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCAAAUGGACUAGCCCUGAAAAUGGAUGACGCUAGCAGUGGAUGGUCGAUGCCCAAUCGUUAAAAGAAGUGAUAAUACUUUUAACGUGUAGGAAGGCGUGAAGGUAACGUAGAAGCUUGAAUGUGAAUUCGAGUGGAGUUGUCUUUAGUGCAGAUCUUGAUGGUAGUAGCAAAUAUUCAAAAGAAUUUACUUUGAAGGCCGAAGUGGGGAAGGGUUCCAUAACAAUGGAAUUCACUUAUGGGUGAGUCGAUCCUAAGGUUUGGGUUAACUCUCUCUAAUAAGGUUACUAGGUCAUUGGAUCGAAAGUGAAGGUGGCUUUAACACUAGUGACUUUAUAGGCCGAAAGGGAAGCGGGUUAAAAUUCCUGCACCAUCGAAUGGGAUAUUAGGGUAACCGAUCGUAAUCCGGGACAUCAAUUGGCGGUCGAGGAAGAGUUAUCUUUUCUUGUUAACAUUGUCUUGGGGUCCUCCGAAUCAGGUCAACUGGAGACGAGGAUUCAUCGCACAAUGGAAGAGCACAGUCCUUUGGAUUGGGUCUCGCAUCCGCUAAAUGGUCCUUGAAAACCGGAUUAUGGUAUUUAAUCCUAUUUGGUGUUCGUACCAAUAACCACAUCAGGUCUCCAAGGUGAAUAGCCUCUGGUCAAAUGUAUUAAUGUAGAUAAGGGAAGUCGGCAAAACCGAUCUGUAACUUCGGGAUAAGGAUUGGCUCUAAAGGCUGGUGGAGUGGACAUAUUGGAGUUUGCUAUUUGUUUUUUACUUUUAGGAUGGGCAACUGUUUUGAAGGUUUAAGAUGGGUGGUAAUUCUUUCCAAUGUGAGGGCUUGCUCGUUCUGCUUUACGAUUAACAGCUAAUUUAGAACUGUGACGAUCACCGGGAAUCCAACUGUUUAAUUAAAACAAAGCAUUGCGAUAAGCUUAAAAGCUUUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAGAUUCAACCUAGCACGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUCAAUGAGAUUCCCACUGUCCCUAACUACUAUACAGCGAAACCACUGCAAGGGGAACGGGCCUUGCAAAAACAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCUGAUAUUGCAUAGUGACCUAAAAGGUGUAGAAUAGGUGGGAGGGGCAACCCGACGGUGAAAUACCACCCCUUUUGGCGUUACUUUGCUAACUUGGAAUAACAGUACCUCAUAAUUCAUUUUAUGAUGGUUUUGGUGAAUAAGCGGAUCAACCACGGGUGAAAUCUGUGCAAAUUGGGCAACUGAUUUGUAUAGCAAAGUAGUCCCUCUGGUCCCGUAUUAUGUCGACCAAGAACAGUUUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUUUGUUAAAAGAUAACGCAAGUGUCCAAAGGCAGGCUCAGUGAGAACAGAAAUCUCACGUAGAGUAAAAGGGCAAAAGCCUGCUUGAUUCUGAUUUUCAGUACUAAUCGGAACUGGGAAACCAGGGCCUAUCGAUCCUUUAUGUGCUUAAAUCUUAACCCUAGAGGUGUCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGCCAAGCGCUCAUAGCGACGCUGCUUUUUGAUCCUUCGAUGUCGGCUCUUCUUAUCAUUGUGAAGCAGAAUUCACAAAGUGUUGGAUUGUUCACCCACUAACAAGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGUUGUCAAUUGUUUGCGUAAUAGUAGCAUGAUUUAGUACGAGAGGAACUGUCAUGCCGGAUCACUGGUCUGUAGGUUUAUUUGACAAAAUAGUGACCUGCCGCUACCAUCCGUUGGAUAAUGGCUGAACGCCUCUAAGUCAGAAUCCAUUCUAGAAACGCAAACCAAAUGCUUUAGAGUGUGAAUGUUGUAGGUAACAUUAGGUUGUUGGUGGGGGACCACUUUCAACUUUAAACCAUAUGAUUAAUCGCUGUUACACUGCAGUUUCCUUCCGGUUAUUGUGGUGGGUGGCUAAAUUCUAAUUUAUAUCCUCGUUCCGCUCAACUCUUCGAUUGUAGACGACUAUCAAAUGAACUAGGUGCUGUAAGCUUCCGAGUAGCGUUCAGUUACGAGGGGUUGAGGCUUUUCCAUUAGUUCUUU

Proteins
Molecule Chains Sequence Length Organism Sequence
60S acidic ribosomal protein P0 C 205 Dictyostelium Discoideum , Homo Sapiens MSGAGSKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTYLKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSISEE
60S ribosomal protein L12 D 166 Dictyostelium Discoideum , Homo Sapiens MPPKVDPSEKVEVFLRVCGGEAGAMSTLAPKLGPLGVSPKKVGDDIAKATQPWKGMKVSVKLTIQNRIAVPEVLPSASALVIKALKEPPRDRKKEKNIKHNGNIPLEEICKIAKTMRFKSLAVDFKGSVLEILGTAHSVGCKVNGKSPRDIQAGIQSGEIEVVEPK
60S ribosomal protein L3 A 398 Dictyostelium Discoideum , Homo Sapiens MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLKLTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA
60S ribosomal protein L9 B 188 Dictyostelium Discoideum , Homo Sapiens MKVINSSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLVGKKELTVDLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSERNVLESN
60S ribosomal protein L23 E 136 Dictyostelium Discoideum , Homo Sapiens MSKAQAVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGNILGPVAKECSDLWPKVATNAGTIV
60S ribosomal protein L10 F 217 Dictyostelium Discoideum , Homo Sapiens MGRRPARCYRYCKNKPYIKSRYCRGVPDAKIRIFDLGRKKASTDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITNHGTLAQYAKDIAAAN
60S ribosomal protein L24 G 69 Dictyostelium Discoideum , Homo Sapiens MKTSLCNYSEFKIYPARGMKFVRGDSKVFHFINTKVESLFFRKINPRDIRWSMVYRRIYKNTTTDVSAK
Ubiquitin-60S ribosomal protein L40 H 52 Dictyostelium Discoideum , Homo Sapiens IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKLLK
Eukaryotic translation initiation factor 6 I 224 Dictyostelium Discoideum , Homo Sapiens MATRLQYENSCDVGVFLKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTCTDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVEVFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAGCVVNDWTAIVGADTTATEISVIESIFAL
Ribosome maturation protein SBDS J 250 Dictyostelium Discoideum , Homo Sapiens MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKFE
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-01-29
Deposition Author(s): Kargas, V. , Warren, A.J.