6Q9D
Ci peripheral arm focused refinement from ovine respiratory sc i+iii2
PDB DOI: 10.2210/pdb6q9d/pdb
Classification: ELECTRON TRANSPORT Organism(s): Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1)
Deposited: 2018-12-18 Deposition Author(s): Letts, J.A. , Sazanov, L.A.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.8 Å
Ci peripheral arm focused refinement from ovine respiratory sc i+iii2
Primary Citation of Related Structures: 6Q9D
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial | V1 | 445 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | FSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTKLFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS |
| NADH:ubiquinone oxidoreductase subunit S4 | S4 | 133 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | AQDQTRDTQLITVDEKLDITTLTGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNLVLTFSTKEDAIAFAEKNGWSYDVEERKVPKPKSKSYGANFSWNKRTRVSTK |
| NADH:ubiquinone oxidoreductase subunit A9 | A9 | 338 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | LHHAVIPHGKGGRSSVSGIVATVFGATGFLGRYLVNHLGRMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMDWNGRDKDSIRRAVEHSNVVINLVGREWETKNFDFEDVFVKIPQAIAQVSKEAGVEKFIHISHLNADIKSSSKYLRNKAVGEKEVRETFPEATIIKPADIFGREDRFLNYFANIRWFGGVPLISLGKKTVKQPVYIVDVTKGIINAIKDPDARGKTFAFVGPNRYLLFDLVQYVFAVAHRPFLPYPMPHFAYRWIGRLFEISPFEPWTTRDKVERIHTTDRTLPHLPGLEDLGVQATPLELKAIEVLRRHRTYRWLSSEIEDVQPAK |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 | A2 | 98 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | AAAAAIRGVRGKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVSLNNFSADQVTRALENVLSSKA |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 | A5 | 115 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | AGLLKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSIVKAEPDVKKLEEQLQGGQIEEVILQAENELSLARKMIQWKPWEPLVEEPPASQWKWPI |
| NADH:ubiquinone oxidoreductase subunit A6 | A6 | 127 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | AASGLRQAAVAASTSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGRDKVREMFKKNAHVTDPRVVDLLVIKGKMELEETINVWKQRTHVMRFFHETEAPRPKDFLSKFYVGHDP |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 | A7 | 112 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | ASATRLIQGLRNWASGRDLQAKLQLRYQEISKRTQPPPKLPVGPSHRLSNNYYCARDGRREAMPPSIVMSSQKVLVAGKPAESSAVAASEKKAVSPAPPIKRWELSQDEPYL |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 | AL | 145 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MELLQVLKRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPTARKFIWTNHKFNLSGTPQQYVPYSTTRKKIQEWVPPSTPYK |
| Acyl carrier protein | AA | 88 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | SDAPPLTLEGIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | AM | 143 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | AASKVKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMRWNRERRRLQIEDFEARIALMPLLQAEKDRRVLQMLRENLEEEATIMKDVPGWKVGESVFHTTRWVTPMMGELYGLRTGEEILSSTYGFIWYT |
| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial | V2 | 217 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | GAGGALFVHRDTPKNNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKGPGFGVQAGL |
| NADH:ubiquinone oxidoreductase core subunit S1 | S1 | 704 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | TATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKTKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIGPLVKTIMTRCIQCTRCIRFASEIAGVDDLGTTGRGNDMQVGTYIEKMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTHTTWEDALSRVAGMLQSCQGNDVAAIAGGLVDAEALIALKDLLNRVDSDTLCTEEVFPTAGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQDIASGSHPFSQVLQEAKKPMVVLGSSALQRNDGAAILAAVSNIAQKIRTSSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKMLFLLGADGGCVTRQDLPKDCFIVYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEGRAQQTKVAVMPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDVEGANYFQQASELSKLVNQQLLADPLVPPQLTIKDFYMTDSISRASQTMAKCVKAVTEGAHAVEEPSIC |
| NADH:ubiquinone oxidoreductase core subunit S2,NADH:ubiquinone oxidoreductase core subunit S2 | S2 | 430 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | ARQWQPDVEWAEQYGGAVMYPTKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSIRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR |
| NADH:ubiquinone oxidoreductase core subunit S3 | S3 | 228 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | ESASADTRPTVRPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFSELEICIHPDGVIPVLTFLRDHSNAQFKSLADLTAVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPVESSVSVYKAANWYEREIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPESLKLEAGDKKPEAK |
| NADH:ubiquinone oxidoreductase core subunit S7 | S7 | 179 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | PSSTQPAVSQARAVVPKPAALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLRIWYRR |
| NADH:ubiquinone oxidoreductase core subunit S8 | S8 | 176 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | TYKYVNLREPSMDMKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR |
| NADH:ubiquinone oxidoreductase subunit V3 | V3 | 75 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | SAESGKNEKGLPPNPKKQSPPKKPASAAPTEPFDNTTYKNLQHHDYSTYTFLDLNLDLSKFRMPQPSSGRESPRH |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial | S6 | 96 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | GVRTSPTGEKVTHTGQVYDDEDYRRVRFVGRQKEVNENFAIDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINLDKETKTGTCGYCGLQFRQQHH |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2018-12-18 Deposition Author(s): Letts, J.A. , Sazanov, L.A.