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6Q1V

Human dna ligase 1 (e592r) bound to an adenylated, hydroxyl terminated dna nick

PDB DOI: 10.2210/pdb6q1v/pdb

Classification: LIGASE/DNA
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2019-08-06
Deposition Author(s): Riccio, A.A. , Schellenberg, M.J. , Tumbale, P.S. , Williams, R.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å

6q1v
Literature

Human dna ligase 1 (e592r) bound to an adenylated, hydroxyl terminated dna nick

Riccio, A.A. , Schellenberg, M.J. , Tumbale, P.S. , Williams, R.S.

Primary Citation of Related Structures: 6Q1V


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA ligase 1 A 645 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SNDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQRDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3') b 11 NA GCTGATGCGTC
DNA (5'-D(P*GP*TP*CP*GP*GP*AP*C)-3') c 7 NA GTCGGAC
DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') d 18 NA GTCCGACGACGCATCAGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-08-06
Deposition Author(s): Riccio, A.A. , Schellenberg, M.J. , Tumbale, P.S. , Williams, R.S.