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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6PX3

Set2 bound to nucleosome

PDB DOI: 10.2210/pdb6px3/pdb

Classification: GENE REGULATION
Organism(s): Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct

Deposited: 2019-07-24
Deposition Author(s): Bilokapic, S. , Halic, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.1 Å

6px3
Literature

Set2 bound to nucleosome

Bilokapic, S. , Halic, M.

Primary Citation of Related Structures: 6PX3


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 A 136 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVMKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3 E 136 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVMKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Ubiquitin-60S ribosomal protein L40,Histone H2A C 221 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct MDSPDLHHHHHHGTLVPRGSMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGTSSGGSGGSGGSGRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Ubiquitin-60S ribosomal protein L40,Histone H2A G 221 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct MDSPDLHHHHHHGTLVPRGSMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGTSSGGSGGSGGSGRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2B 1.1 D 123 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct MAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 H 123 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct MAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone-lysine N-methyltransferase S 939 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct MEASDRASGPTAGSKSEERTKQNGPRSKKEDASDSSTSTGSKSASRSSSATTMSPDDAKPADDSALAQENGVAPKPSRKSSKLPPRNPPQLFNHLPDATEEACRTFQVISDCLYGSRNMGSSDHDALDCDCAEDWRDGKNHACGEDSDCINRATKIECVIGDCNCGEGCQNQRFQRKQYAKVSVIKTEKKGYGLRADTDLQPNDFIYEYVGEVINEPTFRSRMLKYDKEGIKHFYFMSLTKNEFVDATKKGNLGRFCNHSCNPNCYVDKWVVGDKLRMGIFAARYIKAGEELVFNYNVDRYGADPQPCYCGEPNCVGFIGGKTQTERATKLPLATIEALGIEDGDSWDTTVAKKPRKKKASETDEEYVNSLQPKALDEDGVNKVMATLMQCKEKWIAVKLLSRLQATQDDHLRHRVVRMHGYQILKSTLNAFKHDNNVVLQVLDILYNLPRITKNKISDSNIEAVVQPLASSSDERVAFEAKRLLEEWDKLETAYRIPRKKDGRVVSAIANSFEEERRSNREEPTKPADPLANVVIPTGPRSNIPQRNANYYNGVRPRKPPTNLPEGWFVTVDKKTGKYYFYDVNGKVQWQRPTAPAITTPKPSVKAQQDQKALQDIIDSLTKEPTPRQSAGHTPQRSSTPATEPKKEKWRSLPIEKQMKIYENTLFPHVKYVMDKFHGKLPREDLKKFARDVNKKLVASDYKHNRVQDPTVPLSSKQAKKVRKYVYDFFDRALQKYLEYQKRKAQYTSKEGMQSSQTEQNTATPTGTLGKDVDEVMSDVEAPNSSPQSTSSAGRKRKRDDDQDGDHDMRSPADEDAATSSDPPSVKRIKEDDGTGNDVIPSPPPPPPPPAEIPMTEEERSMREQEEALMRENEEAQRLEDEAKRKQLELQNGLAAAKNAGIELGSASFTVSGEPMDVDNDGPPPQEQAQQQKQAVMSH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (145-MER) i 149 NA CTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGC
DNA (145-MER) j 149 NA GCACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-07-24
Deposition Author(s): Bilokapic, S. , Halic, M.