PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6PW2

Structural basis for cooperative binding of ebna1 to the epstein-barr virus dyad symmetry minimal origin of replication

PDB DOI: 10.2210/pdb6pw2/pdb

Classification: viral protein/dna
Organism(s): Epstein-Barr Virus (Strain B95-8) , Synthetic Construct

Deposited: 2019-07-22
Deposition Author(s): Lieberman, P.M. , Malecka, K.A. , Messick, T.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.01 Å

Literature

Structural basis for cooperative binding of ebna1 to the epstein-barr virus dyad symmetry minimal origin of replication

Lieberman, P.M. , Malecka, K.A. , Messick, T.E.

Primary Citation of Related Structures: 6PW2


Proteins
Molecule Chains Sequence Length Organism Sequence
Epstein-Barr nuclear antigen 1 A 147 Epstein-Barr Virus (Strain B95-8) , Synthetic Construct KGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLP
Epstein-Barr nuclear antigen 1 B 147 Epstein-Barr Virus (Strain B95-8) , Synthetic Construct KGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLP
Epstein-Barr nuclear antigen 1 C 147 Epstein-Barr Virus (Strain B95-8) , Synthetic Construct KGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLP
Epstein-Barr nuclear antigen 1 D 147 Epstein-Barr Virus (Strain B95-8) , Synthetic Construct KGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLP
Epstein-Barr nuclear antigen 1 I 147 Epstein-Barr Virus (Strain B95-8) , Synthetic Construct KGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLP
Epstein-Barr nuclear antigen 1 J 147 Epstein-Barr Virus (Strain B95-8) , Synthetic Construct KGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLP
Epstein-Barr nuclear antigen 1 K 147 Epstein-Barr Virus (Strain B95-8) , Synthetic Construct KGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLP
Epstein-Barr nuclear antigen 1 L 147 Epstein-Barr Virus (Strain B95-8) , Synthetic Construct KGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (62-MER) e 62 NA TAACCCTAATTCGATAGCATATGCTTCCCGTTGGGTAACATATGCTATTGAATTAGGGTTAG
DNA (62-MER) g 62 NA TAACCCTAATTCGATAGCATATGCTTCCCGTTGGGTAACATATGCTATTGAATTAGGGTTAG
DNA (62-MER) complementary DNA strand f 62 NA CTAACCCTAATTCAATAGCATATGTTACCCAACGGGAAGCATATGCTATCGAATTAGGGTTA
DNA (62-MER) complementary DNA strand h 62 NA CTAACCCTAATTCAATAGCATATGTTACCCAACGGGAAGCATATGCTATCGAATTAGGGTTA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-07-22
Deposition Author(s): Lieberman, P.M. , Malecka, K.A. , Messick, T.E.