6PQX
Cryo-em structure of hztransib/nicked tir substrate dna hairpin forming complex (hfc)
PDB DOI: 10.2210/pdb6pqx/pdb
Classification: recombination/dna Organism(s): Helicoverpa Zea , Synthetic Construct
Deposited: 2019-07-10 Deposition Author(s): Liu, C. , Schatz, D.G. , Yang, Y.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.6 Å
Cryo-em structure of hztransib/nicked tir substrate dna hairpin forming complex (hfc)
Liu, C. , Schatz, D.G. , Yang, Y.
Primary Citation of Related Structures: 6PQX
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA-mediated transposase | A | 497 | Helicoverpa Zea , Synthetic Construct | KPAPSTIFSPEKALGLLLSLKLSKWQYITLRETTIREGSKEIYPSYYKVQKAKLQCYPPKAFVAVTDSSAKIALQALLDLTVNRIFETIRSPDAIQNKQLILISKWGFDGASNQSRYKQNIESGQGDSSIFMTSLVPLKLTADGDTVWVNPKPCSPMYCRPVQFSFVKETKDVVINEKTAMDDEIEALVPSKCQGHEISHKLMMTMIDGKICTYLSEAKSNAACYLCLAKPTEMSKLDVIASKTISSGVYEFGLSTLHARINVMECLLHIAYRLDFKKWSARGEGHQELLHSRKKLIQDRFKDDLNLLIDIVKQGSGTTNDGNTARRFFEFPDKTAAITGLDEDLIRRFSVILQAITSGEIIDVPKFKEYARTTAEKYVELYDWYYMSSTVHKLLIHGGDIIAENAIVPIGSLSEEASEARNKDFRRFREHHSRKKSRQASNEDILNMLIISSDPLISFTRPKLDAHKRQTYFKETVELLQLQDQEAPTEFHHHHHH |
| DNA-mediated transposase | E | 497 | Helicoverpa Zea , Synthetic Construct | KPAPSTIFSPEKALGLLLSLKLSKWQYITLRETTIREGSKEIYPSYYKVQKAKLQCYPPKAFVAVTDSSAKIALQALLDLTVNRIFETIRSPDAIQNKQLILISKWGFDGASNQSRYKQNIESGQGDSSIFMTSLVPLKLTADGDTVWVNPKPCSPMYCRPVQFSFVKETKDVVINEKTAMDDEIEALVPSKCQGHEISHKLMMTMIDGKICTYLSEAKSNAACYLCLAKPTEMSKLDVIASKTISSGVYEFGLSTLHARINVMECLLHIAYRLDFKKWSARGEGHQELLHSRKKLIQDRFKDDLNLLIDIVKQGSGTTNDGNTARRFFEFPDKTAAITGLDEDLIRRFSVILQAITSGEIIDVPKFKEYARTTAEKYVELYDWYYMSSTVHKLLIHGGDIIAENAIVPIGSLSEEASEARNKDFRRFREHHSRKKSRQASNEDILNMLIISSDPLISFTRPKLDAHKRQTYFKETVELLQLQDQEAPTEFHHHHHH |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*TP*CP*TP*GP*GP*CP*CP*TP*AP*GP*AP*TP*CP*T)-3') | b | 16 | NA | GATCTGGCCTAGATCT |
| DNA (5'-D(P*TP*CP*TP*GP*GP*CP*CP*TP*AP*GP*AP*TP*CP*T)-3') | f | 16 | NA | GATCTGGCCTAGATCT |
| DNA (5'-D(P*CP*AP*CP*GP*GP*TP*GP*GP*AP*TP*CP*GP*AP*AP*AP*A)-3') | c | 16 | NA | CACGGTGGATCGAAAA |
| DNA (5'-D(P*CP*AP*CP*GP*GP*TP*GP*GP*AP*TP*CP*GP*AP*AP*AP*A)-3') | g | 16 | NA | CACGGTGGATCGAAAA |
| TIR substrate DNA transferred strand | d | 32 | NA | TTTTCGATCCACCGTGAGATCTAGGCCAGATC |
| TIR substrate DNA transferred strand | h | 32 | NA | TTTTCGATCCACCGTGAGATCTAGGCCAGATC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-07-10 Deposition Author(s): Liu, C. , Schatz, D.G. , Yang, Y.