6PPU
Cryo-em structure of adnab-amppnp-dna complex
PDB DOI: 10.2210/pdb6ppu/pdb
Classification: DNA BINDING PROTEIN/DNA Organism(s): Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2019-07-08 Deposition Author(s): Jia, N. , Patel, D.J. , Shuman, S. , Unciuleac, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.5 Å
Cryo-em structure of adnab-amppnp-dna complex
Jia, N. , Patel, D.J. , Shuman, S. , Unciuleac, M.
Primary Citation of Related Structures: 6PPU
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| UvrD/REP helicase | B | 1095 | Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MTQVASPVVQARYSPVELSAALGLFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGFATPSQVLGLTFTRKAAGQLLRRVRTRLARLAGAGLAPGSGASDESATVSTYHAFAGTLLREHGLLLPVEPDTRLLSETELWQLAYDVVCAHPGHLDTEKTPAAVTAMVLRLSGALAEHLVDTDQLRDTHVELERLVHTLPAGPYQRDRGPSQWLLRMLATQTERTELVPLIDALHQRMRAEKVMDFGMQMAAAARLAARFPQVGEQLRQRFRVVLLDEYQDTGHAQRIALSSLFGGGADDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPYSDGTPAPTLELRTSWRNPPSTLHVANAVSEEARRRSVAVRALRPRPDAEPGTIRCALLNNVAAERDWVADHLARAYHGAIGRGEAAPTAAVLVRRNADAAPMAEALTARGVPVEVVGVAGLLAVPEVADLVAMLRLIADPTAGSAVMRILTGPRWRFGARDIAALWRRAVELDDRPKGELGTADIVAQAAPDADTACVADAICDPGDAERYSPAGYERIVALGRELTMLRAHLGHPLPELVAEVRRVLGLDAEARAARPVAAGWAGTENLDRFSDLVSDFAGHAGASVSALLAYLDAAVEVENGLAPAELTVSHDRVQILTVHAAKGLEWQVVAVPHLSARVFPSTTQARTWLTDASDLPPLLRGDRATESEIGVPVLDTSDIYDRKILSDKISDHKKSLDQRRVDEERRLLYVAITRAEDTLLLSGHHWGATESKPRGPSEFLCELKTILEEATAAGTPCGEIEHWAPDPAPGETNPLRDQVVEALWPPVASADDHVHRGAQLVAAAMAGEVSAEADQEGWAADVDALLAERERPPQQEDTELPGQLSVSTLVELSRDPKAALTRLRRRLPQRPDPHALLGTTFHEWVQRYFHAERLFDLDDLPGAVDSDSGRAVEESLAELQDAFVKSPWAARTPVEVEVPFDMVLGETVVRGRIDAVFAEPDGTTMVLDWKTGDPPETPEAKEHAAVQLAVYRLAWAAMRGCPPESVRAAFHYVRSGQTVIPETLPGAEELVKLLAAAPTETAEEADRIT |
| ATP-dependent DNA helicase (UvrD/REP) | A | 724 | Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTVTVRLAASTHAEGTMIADALRRAHLVDGIPWSQMAVIVRSVPRVGTALARALTAAGVPVQDNGTDVPVGRQPAAAALLTVLDVTATGHLDADSAVALLTGPIGRVDPVTLRQLRRALRRADGSQPPRDFGDLLVDAIEREPKGLSAEHARTLRRLRAVLTAARRSDASGADPRYTLWQAWHASGLQRRWLAASERGGSVGAQADRDLDAVTTLFDVADQYVNRTAGASLRGLVDHVTRLGAAVARTEPETAAEAVAVLSVHGALAGEWDFVVIAGVQEGLWPNMIPRGGVLGTQHLVDVLDGVADMTDRTVSTRAPLVAEERRLLMAAMGRARTRVMITAVDSXXXXXXXXXXXXXPPLVAPRVLAPSALVGRLRAVVCAPDGAVDDDARACAAAQLARLAAAGVPGADPSQWHAMTSLTTEEPLWSEPGHVVTLSPSTLQMLTDCPLRWLLERHGGDDGRDVRSTVGSLVHALVSEPGKTESQLVNELEKVWDDLPYDAKWYSDNELARHRAMLETFTRWREDTRRQLTEVATEIPVEGIVVEPGENTPGVRVRGRLDRLERDEAGRLVVVDLKTGKSPVTKDDAQNHAQLAMYQLAVAAGLLDDGDEPGGGKLVYLGKAGAAGATEREQDPLTPDKRAEWLETVGEAAAATAGPRFVARVNNGCANCPVRSSCPAQANGDRP |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (29-MER) | x | 70 | NA | TTTTTTTCTAATGCGAGCACTGCTATTCCCTAGCAGTGCTCGCATTAGATTTTGTTTTTTTAGCGGTTTT |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-07-08 Deposition Author(s): Jia, N. , Patel, D.J. , Shuman, S. , Unciuleac, M.