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6PPP

Structure of s. pombe lsm2-8 with processed u6 snrna

PDB DOI: 10.2210/pdb6ppp/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct

Deposited: 2019-07-08
Deposition Author(s): Butcher, S.E. , Montemayor, E.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.33 Å

6ppp
Literature

Structure of s. pombe lsm2-8 with processed u6 snrna

Butcher, S.E. , Montemayor, E.J.

Primary Citation of Related Structures: 6PPP


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Mimic of processed U6 snRNA a 6 NA UUUUUA
Mimic of processed U6 snRNA i 6 NA UUUUUA

Proteins
Molecule Chains Sequence Length Organism Sequence
U6 snRNA-associated Sm-like protein LSm2 B 96 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLADACRRDLANNKRQ
U6 snRNA-associated Sm-like protein LSm2 J 96 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLADACRRDLANNKRQ
Probable U6 snRNA-associated Sm-like protein LSm3 C 95 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct GSMESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPPRN
Probable U6 snRNA-associated Sm-like protein LSm3 K 95 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct GSMESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPPRN
Probable U6 snRNA-associated Sm-like protein LSm4 D 129 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQVAKQQAQQRENRGSRFRGRGQRGRGNYGHTAPNRRGRGRGGHMWSHPQFEK
Probable U6 snRNA-associated Sm-like protein LSm4 L 129 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQVAKQQAQQRENRGSRFRGRGQRGRGNYGHTAPNRRGRGRGGHMWSHPQFEK
U6 snRNA-associated Sm-like protein LSm5 E 80 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct MSMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPGGKPE
U6 snRNA-associated Sm-like protein LSm5 M 80 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct MSMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPGGKPE
U6 snRNA-associated Sm-like protein LSm6 F 77 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct GSMDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALDD
U6 snRNA-associated Sm-like protein LSm6 N 77 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct GSMDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALDD
U6 snRNA-associated Sm-like protein LSm7 G 119 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct MSSLQKRPGPGNSSQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAEHHHHHH
U6 snRNA-associated Sm-like protein LSm7 O 119 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct MSSLQKRPGPGNSSQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAEHHHHHH
U6 snRNA-associated Sm-like protein LSm8 H 94 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH
U6 snRNA-associated Sm-like protein LSm8 P 94 Schizosaccharomyces Pombe (Strain 972 / Atcc 24843) , Synthetic Construct MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-07-08
Deposition Author(s): Butcher, S.E. , Montemayor, E.J.