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6P4F

Crystal structure of the xpb-bax1-forked dna ternary complex

PDB DOI: 10.2210/pdb6p4f/pdb

Classification: HYDROLASE/DNA
Organism(s): Sulfurisphaera Tokodaii (Strain Dsm 16993 / Jcm 10545 / Nbrc 100140 / 7) , Synthetic Construct

Deposited: 2019-05-27
Deposition Author(s): Fan, L. , He, F. , Hilario, E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.55 Å

Literature

Crystal structure of the xpb-bax1-forked dna ternary complex

Fan, L. , He, F. , Hilario, E.

Primary Citation of Related Structures: 6P4F


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-dependent ATPase XPBII A 440 Sulfurisphaera Tokodaii (Strain Dsm 16993 / Jcm 10545 / Nbrc 100140 / 7) , Synthetic Construct GSVYLRYFKGLILSDAYAPGLKWSDELKAYSALAFKYRDVRKYFLEKEIEVEENVIDSLPFPLIKDKIELRDYQAEAVKAWLKEKRGIIVLPTGAGKTQVALKIVSIMKVATLIVVPTIDLITQWKERINKYLDFDPGIIGGGEDSLKGITVITYDSAYTRAEELGNKFPLLIFDEVHHLPSEGYSIMAQLFASPYRLGLTATPERDDGKHELYPILVGPIVYRKSVEELAGKYIAKYKIKKLYVSLTNEEKKRYDGLRKKLKDFLSSRGLKLQNLDDFHRLVKLAAKDKEAREALLAWHESLNIAVNSQSKIEKLREILQEYKNEKIIVFTRDTQMAYRISKTFLIPVVTYKTDKDEREEILQKFRDGEYRVIVASTVFDEGVDVPDATLAIVMGGYGTKRQFLQRLGRILRKKDKEALLIEIVTKGTADYRLSRRRRE
DNA-dependent ATPase XPBII C 440 Sulfurisphaera Tokodaii (Strain Dsm 16993 / Jcm 10545 / Nbrc 100140 / 7) , Synthetic Construct GSVYLRYFKGLILSDAYAPGLKWSDELKAYSALAFKYRDVRKYFLEKEIEVEENVIDSLPFPLIKDKIELRDYQAEAVKAWLKEKRGIIVLPTGAGKTQVALKIVSIMKVATLIVVPTIDLITQWKERINKYLDFDPGIIGGGEDSLKGITVITYDSAYTRAEELGNKFPLLIFDEVHHLPSEGYSIMAQLFASPYRLGLTATPERDDGKHELYPILVGPIVYRKSVEELAGKYIAKYKIKKLYVSLTNEEKKRYDGLRKKLKDFLSSRGLKLQNLDDFHRLVKLAAKDKEAREALLAWHESLNIAVNSQSKIEKLREILQEYKNEKIIVFTRDTQMAYRISKTFLIPVVTYKTDKDEREEILQKFRDGEYRVIVASTVFDEGVDVPDATLAIVMGGYGTKRQFLQRLGRILRKKDKEALLIEIVTKGTADYRLSRRRRE
Endonuclease Bax1 B 373 Sulfurisphaera Tokodaii (Strain Dsm 16993 / Jcm 10545 / Nbrc 100140 / 7) , Synthetic Construct MGLPWELARFSIVKDEVLPHFATNEDLDLANEIISLFKAGKKLGEIDEEIEYLEKIYDHKLVRAFVKLLTRLCEFELDSPIPPIQIRRELFKYGPVLDEKEREDIIQKVSKKLGADIMRFVFSDLDEEKKIIKAPTISAEDLIRWYNLSLLQTLLFKAYKLTVYVSSNWKEIIRRAKWLGLMYFAYDKPLRFEFLGPATLVKLTEKYGRNLAVLLQFIISSQNWKIEAELVLGKKFKRVYKLKLANFKELKELVIDEKRFDSSVEEKFYKDFTNVIKGWKIIREPEPLVVDNRVFIPDFLVEKGNLKVYVEIVGFWTKEYIKEKLDKLKKVKYPILILLNEELGKEKFNGMNVITYKRKIDISLVYKWLRELE
Endonuclease Bax1 D 373 Sulfurisphaera Tokodaii (Strain Dsm 16993 / Jcm 10545 / Nbrc 100140 / 7) , Synthetic Construct MGLPWELARFSIVKDEVLPHFATNEDLDLANEIISLFKAGKKLGEIDEEIEYLEKIYDHKLVRAFVKLLTRLCEFELDSPIPPIQIRRELFKYGPVLDEKEREDIIQKVSKKLGADIMRFVFSDLDEEKKIIKAPTISAEDLIRWYNLSLLQTLLFKAYKLTVYVSSNWKEIIRRAKWLGLMYFAYDKPLRFEFLGPATLVKLTEKYGRNLAVLLQFIISSQNWKIEAELVLGKKFKRVYKLKLANFKELKELVIDEKRFDSSVEEKFYKDFTNVIKGWKIIREPEPLVVDNRVFIPDFLVEKGNLKVYVEIVGFWTKEYIKEKLDKLKKVKYPILILLNEELGKEKFNGMNVITYKRKIDISLVYKWLRELE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*AP*AP*CP*AP*TP*CP*CP*TP*TP*TP*GP*CP*TP*AP*CP*AP*A)-3') e 24 NA TTGACTCAACATCCTTTGCTACAA
DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*AP*AP*CP*AP*TP*CP*CP*TP*TP*TP*GP*CP*TP*AP*CP*AP*A)-3') g 24 NA TTGACTCAACATCCTTTGCTACAA
DNA (5'-D(P*TP*GP*TP*AP*GP*GP*TP*TP*TP*CP*CP*AP*TP*GP*TP*TP*GP*AP*GP*TP*CP*A)-3') f 23 NA TTGTAGGTTTCCATGTTGAGTCA
DNA (5'-D(P*TP*GP*TP*AP*GP*GP*TP*TP*TP*CP*CP*AP*TP*GP*TP*TP*GP*AP*GP*TP*CP*A)-3') h 23 NA TTGTAGGTTTCCATGTTGAGTCA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-05-27
Deposition Author(s): Fan, L. , He, F. , Hilario, E.