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6OZF

Crystal structure of thermotoga maritima (tm) endonuclease v (d110n) in complex with a 12mer dna containing an inosine followed by a ribo-adenosine

PDB DOI: 10.2210/pdb6ozf/pdb

Classification: HYDROLASE
Organism(s): Panax Ginseng , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2019-05-15
Deposition Author(s): Samara, N.L. , Yang, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.8 Å

Literature

Crystal structure of thermotoga maritima (tm) endonuclease v (d110n) in complex with a 12mer dna containing an inosine followed by a ribo-adenosine

Samara, N.L. , Yang, W.

Primary Citation of Related Structures: 6OZF


Proteins
Molecule Chains Sequence Length Organism Sequence
Endonuclease V A 225 Panax Ginseng , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MDYRQLHRWDLPPEEAIKVQNELRKKIKLTPYEGEPEYVAGVDLSFPGKEEGLAVIVVLEYPSFKILEVVSERGEITFPYIPGLLAFREGPLFLKAWEKLRTKPDVVVFNGQGLAHPRKLGIASHMGLFIEIPTIGVAKSRLYGTFKMPEDKRCSWSYLYDGEEIIGCVIRTKEGSAPIFVSPGHLMDVESSKRLIKAFTLPGRRIPEPTRLAHIYTQRLKKGLF
Endonuclease V B 225 Panax Ginseng , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MDYRQLHRWDLPPEEAIKVQNELRKKIKLTPYEGEPEYVAGVDLSFPGKEEGLAVIVVLEYPSFKILEVVSERGEITFPYIPGLLAFREGPLFLKAWEKLRTKPDVVVFNGQGLAHPRKLGIASHMGLFIEIPTIGVAKSRLYGTFKMPEDKRCSWSYLYDGEEIIGCVIRTKEGSAPIFVSPGHLMDVESSKRLIKAFTLPGRRIPEPTRLAHIYTQRLKKGLF

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA/RNA (5'-D(P*AP*AP*TP*GP*I)-R(P*A)-D(P*GP*AP*TP*GP*CP*T)-3') c 12 NA AATGIAGATGCT
DNA/RNA (5'-D(P*AP*AP*TP*GP*I)-R(P*A)-D(P*GP*AP*TP*GP*CP*T)-3') d 12 NA AATGIAGATGCT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-05-15
Deposition Author(s): Samara, N.L. , Yang, W.