PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6OWT

Structure of sivsmm nef and smm tetherin bound to the clathrin adaptor ap-2 complex

PDB DOI: 10.2210/pdb6owt/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Brachybacterium Faecium (Strain Atcc 43885 / Dsm 4810 / Ncib 9860) , Enterobacter Aerogenes , Pandinus Imperator , Thermoanaerobacter Brockii

Deposited: 2019-05-10
Deposition Author(s): Buffalo, C.Z. , Hurley, J.H. , Ren, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

6owt
Literature

Structure of sivsmm nef and smm tetherin bound to the clathrin adaptor ap-2 complex

Buffalo, C.Z. , Hurley, J.H. , Ren, X.

Primary Citation of Related Structures: 6OWT


Proteins
Molecule Chains Sequence Length Organism Sequence
AP-2 complex subunit alpha A 939 Brachybacterium Faecium (Strain Atcc 43885 / Dsm 4810 / Ncib 9860) , Enterobacter Aerogenes , Pandinus Imperator , Thermoanaerobacter Brockii MPAVSKGEGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPERESSILAKLKKKKGPSTVTDLEETKRERSIDVNGGPEPVPASTSAASTPSPSADLLGLGAVPPAPTGPPPTSGGGLLVDVFSDSASAVAPLAPGSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRYGGTFQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQRLCELLSEQF
AP-2 complex subunit beta B 591 Brachybacterium Faecium (Strain Atcc 43885 / Dsm 4810 / Ncib 9860) , Enterobacter Aerogenes , Pandinus Imperator , Thermoanaerobacter Brockii MTDSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSHGIHRK
Adaptor protein complex AP-2, mu1 M 141 Brachybacterium Faecium (Strain Atcc 43885 / Dsm 4810 / Ncib 9860) , Enterobacter Aerogenes , Pandinus Imperator , Thermoanaerobacter Brockii MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQ
Tetherin,Protein Nef T 275 Brachybacterium Faecium (Strain Atcc 43885 / Dsm 4810 / Ncib 9860) , Enterobacter Aerogenes , Pandinus Imperator , Thermoanaerobacter Brockii ILYDYSRMPMGDIWKEDGDKRSKGSDEASEGSGMGGVTSKKQSKRRQGLRERLLQARGETDGYSRSRGELGKGWNLPSAEGQGYSEEQFMNTPWRNPAREGEKLKYRQQNMDDVDDDDDELVGVAVHPKVPLRAMSYKLAIDMSHFIKEKGGLEGIYYSDRRHRILDIYLEKEEGIIPDWQNYTSGPGVRYPLFFGWLWKLVPVNVSDEAQEDETHCLVHPAQTSQWDDPWGEVLAWKFDPKLAYTYEAFIRYPEEFGNDSGLSKEEVKRRLTAR
Tetherin,Protein Nef N 275 Brachybacterium Faecium (Strain Atcc 43885 / Dsm 4810 / Ncib 9860) , Enterobacter Aerogenes , Pandinus Imperator , Thermoanaerobacter Brockii ILYDYSRMPMGDIWKEDGDKRSKGSDEASEGSGMGGVTSKKQSKRRQGLRERLLQARGETDGYSRSRGELGKGWNLPSAEGQGYSEEQFMNTPWRNPAREGEKLKYRQQNMDDVDDDDDELVGVAVHPKVPLRAMSYKLAIDMSHFIKEKGGLEGIYYSDRRHRILDIYLEKEEGIIPDWQNYTSGPGVRYPLFFGWLWKLVPVNVSDEAQEDETHCLVHPAQTSQWDDPWGEVLAWKFDPKLAYTYEAFIRYPEEFGNDSGLSKEEVKRRLTAR
AP-2 complex subunit sigma S 142 Brachybacterium Faecium (Strain Atcc 43885 / Dsm 4810 / Ncib 9860) , Enterobacter Aerogenes , Pandinus Imperator , Thermoanaerobacter Brockii MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHCVSELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-05-10
Deposition Author(s): Buffalo, C.Z. , Hurley, J.H. , Ren, X.