6OWT
Structure of sivsmm nef and smm tetherin bound to the clathrin adaptor ap-2 complex
PDB DOI: 10.2210/pdb6owt/pdb
Classification: PROTEIN TRANSPORT Organism(s): Cercocebus Atys , Mus Musculus , Rattus Norvegicus , Simian Immunodeficiency Virus
Deposited: 2019-05-10 Deposition Author(s): Buffalo, C.Z. , Hurley, J.H. , Ren, X.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.8 Å
Structure of sivsmm nef and smm tetherin bound to the clathrin adaptor ap-2 complex
Buffalo, C.Z. , Hurley, J.H. , Ren, X.
Primary Citation of Related Structures: 6OWT
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| AP-2 complex subunit alpha | A | 939 | Cercocebus Atys , Mus Musculus , Rattus Norvegicus , Simian Immunodeficiency Virus | MPAVSKGEGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPERESSILAKLKKKKGPSTVTDLEETKRERSIDVNGGPEPVPASTSAASTPSPSADLLGLGAVPPAPTGPPPTSGGGLLVDVFSDSASAVAPLAPGSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRYGGTFQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQRLCELLSEQF |
| AP-2 complex subunit beta | B | 591 | Cercocebus Atys , Mus Musculus , Rattus Norvegicus , Simian Immunodeficiency Virus | MTDSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSHGIHRK |
| Adaptor protein complex AP-2, mu1 | M | 141 | Cercocebus Atys , Mus Musculus , Rattus Norvegicus , Simian Immunodeficiency Virus | MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQ |
| Tetherin,Protein Nef | T | 275 | Cercocebus Atys , Mus Musculus , Rattus Norvegicus , Simian Immunodeficiency Virus | ILYDYSRMPMGDIWKEDGDKRSKGSDEASEGSGMGGVTSKKQSKRRQGLRERLLQARGETDGYSRSRGELGKGWNLPSAEGQGYSEEQFMNTPWRNPAREGEKLKYRQQNMDDVDDDDDELVGVAVHPKVPLRAMSYKLAIDMSHFIKEKGGLEGIYYSDRRHRILDIYLEKEEGIIPDWQNYTSGPGVRYPLFFGWLWKLVPVNVSDEAQEDETHCLVHPAQTSQWDDPWGEVLAWKFDPKLAYTYEAFIRYPEEFGNDSGLSKEEVKRRLTAR |
| Tetherin,Protein Nef | N | 275 | Cercocebus Atys , Mus Musculus , Rattus Norvegicus , Simian Immunodeficiency Virus | ILYDYSRMPMGDIWKEDGDKRSKGSDEASEGSGMGGVTSKKQSKRRQGLRERLLQARGETDGYSRSRGELGKGWNLPSAEGQGYSEEQFMNTPWRNPAREGEKLKYRQQNMDDVDDDDDELVGVAVHPKVPLRAMSYKLAIDMSHFIKEKGGLEGIYYSDRRHRILDIYLEKEEGIIPDWQNYTSGPGVRYPLFFGWLWKLVPVNVSDEAQEDETHCLVHPAQTSQWDDPWGEVLAWKFDPKLAYTYEAFIRYPEEFGNDSGLSKEEVKRRLTAR |
| AP-2 complex subunit sigma | S | 142 | Cercocebus Atys , Mus Musculus , Rattus Norvegicus , Simian Immunodeficiency Virus | MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHCVSELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-05-10 Deposition Author(s): Buffalo, C.Z. , Hurley, J.H. , Ren, X.