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FASTA Sequence PDB Format mmCIF Format
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6ORO

Modified bg505 sosip-based immunogen rc1 in complex with the elicited v3-glycan patch antibody ab874nhp

PDB DOI: 10.2210/pdb6oro/pdb

Classification: VIRAL PROTEIN/Immune System
Organism(s): Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2019-04-30
Deposition Author(s): Abernathy, M.E. , Bjorkman, P.J. , Gristick, H.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

6oro
Literature

Modified bg505 sosip-based immunogen rc1 in complex with the elicited v3-glycan patch antibody ab874nhp

Abernathy, M.E. , Bjorkman, P.J. , Gristick, H.B.

Primary Citation of Related Structures: 6ORO


Proteins
Molecule Chains Sequence Length Organism Sequence
RC1 variant of HIV-1 Env glycoprotein gp41 A 153 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVSLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEPQQHLLKDTHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
RC1 variant of HIV-1 Env glycoprotein gp41 C 153 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVSLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEPQQHLLKDTHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
RC1 variant of HIV-1 Env glycoprotein gp41 F 153 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVSLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEPQQHLLKDTHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
RC1 variant of HIV-1 Env glycoprotein gp120 B 481 Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPNLLSNMRGELKQCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYFGDIIGDIRMAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSIVLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
RC1 variant of HIV-1 Env glycoprotein gp120 G 481 Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPNLLSNMRGELKQCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYFGDIIGDIRMAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSIVLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
RC1 variant of HIV-1 Env glycoprotein gp120 I 481 Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPNLLSNMRGELKQCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYFGDIIGDIRMAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSIVLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
Ab874NHP antibody Fab heavy chain D 254 Human Immunodeficiency Virus 1 , Macaca Mulatta MGWSCIILFLVATATGVHSEVQLVETGGGLVQPGGSLKLSCAASGFTFSSYGMNWVRQAPGKGLEWVSGINSGGGTKYYADSVKGRFTISRDNSKNTLSLQMNSLRAEDTAVYYCAKSPWGQSTSFEYFEFWGQGALVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTXVDKRVEPKSCDKTHHHHHH
Ab874NHP antibody Fab heavy chain H 254 Human Immunodeficiency Virus 1 , Macaca Mulatta MGWSCIILFLVATATGVHSEVQLVETGGGLVQPGGSLKLSCAASGFTFSSYGMNWVRQAPGKGLEWVSGINSGGGTKYYADSVKGRFTISRDNSKNTLSLQMNSLRAEDTAVYYCAKSPWGQSTSFEYFEFWGQGALVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTXVDKRVEPKSCDKTHHHHHH
Ab874NHP antibody Fab heavy chain J 254 Human Immunodeficiency Virus 1 , Macaca Mulatta MGWSCIILFLVATATGVHSEVQLVETGGGLVQPGGSLKLSCAASGFTFSSYGMNWVRQAPGKGLEWVSGINSGGGTKYYADSVKGRFTISRDNSKNTLSLQMNSLRAEDTAVYYCAKSPWGQSTSFEYFEFWGQGALVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTXVDKRVEPKSCDKTHHHHHH
Ab874NHP antibody Fab light chain E 233 Human Immunodeficiency Virus 1 , Macaca Mulatta MGWSCIILFLVATATGSNSQTVVTQPRSVSVSQGQTARITCGGDNIGSEAVQWYQQKPAQAPVLVIYDDSERPSGIPDRFSGSKSGNTATLTISGVEAGDEADYYCQVWDSSSDHPLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Ab874NHP antibody Fab light chain K 233 Human Immunodeficiency Virus 1 , Macaca Mulatta MGWSCIILFLVATATGSNSQTVVTQPRSVSVSQGQTARITCGGDNIGSEAVQWYQQKPAQAPVLVIYDDSERPSGIPDRFSGSKSGNTATLTISGVEAGDEADYYCQVWDSSSDHPLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Ab874NHP antibody Fab light chain L 233 Human Immunodeficiency Virus 1 , Macaca Mulatta MGWSCIILFLVATATGSNSQTVVTQPRSVSVSQGQTARITCGGDNIGSEAVQWYQQKPAQAPVLVIYDDSERPSGIPDRFSGSKSGNTATLTISGVEAGDEADYYCQVWDSSSDHPLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-04-30
Deposition Author(s): Abernathy, M.E. , Bjorkman, P.J. , Gristick, H.B.