PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6OPM

Casposase bound to integration product

PDB DOI: 10.2210/pdb6opm/pdb

Classification: HYDROLASE/DNA
Organism(s): Methanosarcina Mazei , Synthetic Construct

Deposited: 2019-04-25
Deposition Author(s): Dyda, F. , Hickman, A.B. , Kailasan, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.1 Å

6opm
Literature

Casposase bound to integration product

Dyda, F. , Hickman, A.B. , Kailasan, S.

Primary Citation of Related Structures: 6OPM


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas1 A 431 Methanosarcina Mazei , Synthetic Construct GSAMDPGSGSGNSHNSLMKLLLLNGHGINMHVDGAKLHIKDGRFSTTEEPQEYVFSPKRIDIDGIIIYGKSGNLTLEAIRWLIKHNVQVSILDWNGKLLTTMLPPESTNLRTKFAQYHAFEDKEARLEIAKKFIEAKFYKSKAVLDFLSQRYPEINFDILDGLTKLKDVKSTREILGVEGTLAGKYWIEFSKAVPKEYDFSNRIDQFRRAMGSGDMINTMLNYGYSLLEAECLKAINSVGLDTHVGFLHEMAPSKNSLAYDLQEPFRFIVDLAVISLIESGAMESKDFIRTENYNLRLKPTGARKIVNEFSNTLNKKVSYQGKESTWSYVIFLKVRELAHYLTSKKEKLDFTKPEYEIERIDSYDIRQKILSISYVDWKKLGFSKGTLHYMKQNAKSDKPFTLNAHVLERVNKWEALVSSQRDGRENLYFQ
CRISPR-associated endonuclease Cas1 B 431 Methanosarcina Mazei , Synthetic Construct GSAMDPGSGSGNSHNSLMKLLLLNGHGINMHVDGAKLHIKDGRFSTTEEPQEYVFSPKRIDIDGIIIYGKSGNLTLEAIRWLIKHNVQVSILDWNGKLLTTMLPPESTNLRTKFAQYHAFEDKEARLEIAKKFIEAKFYKSKAVLDFLSQRYPEINFDILDGLTKLKDVKSTREILGVEGTLAGKYWIEFSKAVPKEYDFSNRIDQFRRAMGSGDMINTMLNYGYSLLEAECLKAINSVGLDTHVGFLHEMAPSKNSLAYDLQEPFRFIVDLAVISLIESGAMESKDFIRTENYNLRLKPTGARKIVNEFSNTLNKKVSYQGKESTWSYVIFLKVRELAHYLTSKKEKLDFTKPEYEIERIDSYDIRQKILSISYVDWKKLGFSKGTLHYMKQNAKSDKPFTLNAHVLERVNKWEALVSSQRDGRENLYFQ
CRISPR-associated endonuclease Cas1 C 431 Methanosarcina Mazei , Synthetic Construct GSAMDPGSGSGNSHNSLMKLLLLNGHGINMHVDGAKLHIKDGRFSTTEEPQEYVFSPKRIDIDGIIIYGKSGNLTLEAIRWLIKHNVQVSILDWNGKLLTTMLPPESTNLRTKFAQYHAFEDKEARLEIAKKFIEAKFYKSKAVLDFLSQRYPEINFDILDGLTKLKDVKSTREILGVEGTLAGKYWIEFSKAVPKEYDFSNRIDQFRRAMGSGDMINTMLNYGYSLLEAECLKAINSVGLDTHVGFLHEMAPSKNSLAYDLQEPFRFIVDLAVISLIESGAMESKDFIRTENYNLRLKPTGARKIVNEFSNTLNKKVSYQGKESTWSYVIFLKVRELAHYLTSKKEKLDFTKPEYEIERIDSYDIRQKILSISYVDWKKLGFSKGTLHYMKQNAKSDKPFTLNAHVLERVNKWEALVSSQRDGRENLYFQ
CRISPR-associated endonuclease Cas1 D 431 Methanosarcina Mazei , Synthetic Construct GSAMDPGSGSGNSHNSLMKLLLLNGHGINMHVDGAKLHIKDGRFSTTEEPQEYVFSPKRIDIDGIIIYGKSGNLTLEAIRWLIKHNVQVSILDWNGKLLTTMLPPESTNLRTKFAQYHAFEDKEARLEIAKKFIEAKFYKSKAVLDFLSQRYPEINFDILDGLTKLKDVKSTREILGVEGTLAGKYWIEFSKAVPKEYDFSNRIDQFRRAMGSGDMINTMLNYGYSLLEAECLKAINSVGLDTHVGFLHEMAPSKNSLAYDLQEPFRFIVDLAVISLIESGAMESKDFIRTENYNLRLKPTGARKIVNEFSNTLNKKVSYQGKESTWSYVIFLKVRELAHYLTSKKEKLDFTKPEYEIERIDSYDIRQKILSISYVDWKKLGFSKGTLHYMKQNAKSDKPFTLNAHVLERVNKWEALVSSQRDGRENLYFQ
unknown H 13 Methanosarcina Mazei , Synthetic Construct XXXXXXXXXXXXX
unknown J 13 Methanosarcina Mazei , Synthetic Construct XXXXXXXXXXXXX

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA 21-mer e 21 NA ATATCCCCGCACTTAAGTGCG
DNA 21-mer f 21 NA ATATCCCCGCACTTAAGTGCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-04-25
Deposition Author(s): Dyda, F. , Hickman, A.B. , Kailasan, S.