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FASTA Sequence PDB Format mmCIF Format
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6OPM

Casposase bound to integration product

PDB DOI: 10.2210/pdb6opm/pdb

Classification: HYDROLASE/DNA
Organism(s): Dendronephthya Sp. Ssal-2002 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2019-04-25
Deposition Author(s): Dyda, F. , Hickman, A.B. , Kailasan, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.1 Å

6opm
Literature

Casposase bound to integration product

Dyda, F. , Hickman, A.B. , Kailasan, S.

Primary Citation of Related Structures: 6OPM


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas1 A 431 Dendronephthya Sp. Ssal-2002 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSAMDPGSGSGNSHNSLMKLLLLNGHGINMHVDGAKLHIKDGRFSTTEEPQEYVFSPKRIDIDGIIIYGKSGNLTLEAIRWLIKHNVQVSILDWNGKLLTTMLPPESTNLRTKFAQYHAFEDKEARLEIAKKFIEAKFYKSKAVLDFLSQRYPEINFDILDGLTKLKDVKSTREILGVEGTLAGKYWIEFSKAVPKEYDFSNRIDQFRRAMGSGDMINTMLNYGYSLLEAECLKAINSVGLDTHVGFLHEMAPSKNSLAYDLQEPFRFIVDLAVISLIESGAMESKDFIRTENYNLRLKPTGARKIVNEFSNTLNKKVSYQGKESTWSYVIFLKVRELAHYLTSKKEKLDFTKPEYEIERIDSYDIRQKILSISYVDWKKLGFSKGTLHYMKQNAKSDKPFTLNAHVLERVNKWEALVSSQRDGRENLYFQ
CRISPR-associated endonuclease Cas1 B 431 Dendronephthya Sp. Ssal-2002 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSAMDPGSGSGNSHNSLMKLLLLNGHGINMHVDGAKLHIKDGRFSTTEEPQEYVFSPKRIDIDGIIIYGKSGNLTLEAIRWLIKHNVQVSILDWNGKLLTTMLPPESTNLRTKFAQYHAFEDKEARLEIAKKFIEAKFYKSKAVLDFLSQRYPEINFDILDGLTKLKDVKSTREILGVEGTLAGKYWIEFSKAVPKEYDFSNRIDQFRRAMGSGDMINTMLNYGYSLLEAECLKAINSVGLDTHVGFLHEMAPSKNSLAYDLQEPFRFIVDLAVISLIESGAMESKDFIRTENYNLRLKPTGARKIVNEFSNTLNKKVSYQGKESTWSYVIFLKVRELAHYLTSKKEKLDFTKPEYEIERIDSYDIRQKILSISYVDWKKLGFSKGTLHYMKQNAKSDKPFTLNAHVLERVNKWEALVSSQRDGRENLYFQ
CRISPR-associated endonuclease Cas1 C 431 Dendronephthya Sp. Ssal-2002 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSAMDPGSGSGNSHNSLMKLLLLNGHGINMHVDGAKLHIKDGRFSTTEEPQEYVFSPKRIDIDGIIIYGKSGNLTLEAIRWLIKHNVQVSILDWNGKLLTTMLPPESTNLRTKFAQYHAFEDKEARLEIAKKFIEAKFYKSKAVLDFLSQRYPEINFDILDGLTKLKDVKSTREILGVEGTLAGKYWIEFSKAVPKEYDFSNRIDQFRRAMGSGDMINTMLNYGYSLLEAECLKAINSVGLDTHVGFLHEMAPSKNSLAYDLQEPFRFIVDLAVISLIESGAMESKDFIRTENYNLRLKPTGARKIVNEFSNTLNKKVSYQGKESTWSYVIFLKVRELAHYLTSKKEKLDFTKPEYEIERIDSYDIRQKILSISYVDWKKLGFSKGTLHYMKQNAKSDKPFTLNAHVLERVNKWEALVSSQRDGRENLYFQ
CRISPR-associated endonuclease Cas1 D 431 Dendronephthya Sp. Ssal-2002 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSAMDPGSGSGNSHNSLMKLLLLNGHGINMHVDGAKLHIKDGRFSTTEEPQEYVFSPKRIDIDGIIIYGKSGNLTLEAIRWLIKHNVQVSILDWNGKLLTTMLPPESTNLRTKFAQYHAFEDKEARLEIAKKFIEAKFYKSKAVLDFLSQRYPEINFDILDGLTKLKDVKSTREILGVEGTLAGKYWIEFSKAVPKEYDFSNRIDQFRRAMGSGDMINTMLNYGYSLLEAECLKAINSVGLDTHVGFLHEMAPSKNSLAYDLQEPFRFIVDLAVISLIESGAMESKDFIRTENYNLRLKPTGARKIVNEFSNTLNKKVSYQGKESTWSYVIFLKVRELAHYLTSKKEKLDFTKPEYEIERIDSYDIRQKILSISYVDWKKLGFSKGTLHYMKQNAKSDKPFTLNAHVLERVNKWEALVSSQRDGRENLYFQ
unknown H 13 Dendronephthya Sp. Ssal-2002 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) XXXXXXXXXXXXX
unknown J 13 Dendronephthya Sp. Ssal-2002 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) XXXXXXXXXXXXX

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA 21-mer e 21 NA ATATCCCCGCACTTAAGTGCG
DNA 21-mer f 21 NA ATATCCCCGCACTTAAGTGCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-04-25
Deposition Author(s): Dyda, F. , Hickman, A.B. , Kailasan, S.