6OLA
Structure of the pcv2d virus-like particle
PDB DOI: 10.2210/pdb6ola/pdb
Classification: VIRUS LIKE PARTICLE Organism(s): Porcine Circovirus 2
Deposited: 2019-04-16 Deposition Author(s): Alimova, A. , Galarza, J. , Gottlieb, P. , Khayat, R. , Wen, K.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.3 Å
Structure of the pcv2d virus-like particle
Alimova, A. , Galarza, J. , Gottlieb, P. , Khayat, R. , Wen, K.
Primary Citation of Related Structures: 6OLA
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Capsid protein | A0 | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | A1 | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | A2 | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | A3 | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | A4 | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | A5 | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | A6 | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | A7 | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | A8 | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | A9 | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AA | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AB | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AC | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AD | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AE | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AF | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AG | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AH | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AI | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AJ | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AK | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AL | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AM | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AN | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AO | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AP | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AQ | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AR | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AS | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AT | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AU | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AV | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AW | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AX | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AY | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Capsid protein | AZ | 196 | Porcine Circovirus 2 | YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGGSNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANALTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWLRLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*CP*CP*GP*G)-3') | b0 | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | b1 | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | b2 | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | b3 | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | b4 | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | b5 | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | b6 | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | b7 | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | b8 | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | b9 | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | ba | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bb | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bc | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bd | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | be | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bf | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bg | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bh | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bi | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bj | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bk | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bl | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bm | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bn | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bo | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bp | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bq | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | br | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bs | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bt | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bu | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bv | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bw | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bx | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | by | 4 | NA | CCGG |
| DNA (5'-D(P*CP*CP*GP*G)-3') | bz | 4 | NA | CCGG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-04-16 Deposition Author(s): Alimova, A. , Galarza, J. , Gottlieb, P. , Khayat, R. , Wen, K.