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6OKK
Cryo-em structure of the plasmodium falciparum 80s ribosome bound to the anti-protozoan drug emetine, small subunit
PDB DOI: 10.2210/pdb6okk/pdb
Classification: ribosome/inhibitor Organism(s): Plasmodium Falciparum (Isolate 3D7)
Deposited: 2019-04-13 Deposition Author(s): Scheres, S.H.W. , Wong, W.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.3 Å
Cryo-em structure of the plasmodium falciparum 80s ribosome bound to the anti-protozoan drug emetine, small subunit
Primary Citation of Related Structures: 6OKK
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 40S ribosomal protein S24 | A | 133 | Plasmodium Falciparum (Isolate 3D7) | MTDQFTIRVKKYMSNPLLRRKQFALEILHPNKGSVAKKEVKERLAKMYKLNNVNTIVLFGFKTLFGGGRTKGFGLIYKNVDAVKKFEKKYRLVREGLIDKETKAGRRASKELKNRRKKVRGTEKTKVSGAKKK |
| 40S ribosomal protein S7 | J | 194 | Plasmodium Falciparum (Isolate 3D7) | MDAVQKRVLKSNPSDLEKEIAQCLLDIELSSSSDIKTDAKEIKLLSCDLIEVEKLKKKTILIYIPYKIYTTYVRKIQRKLINELEKKTKKYVVLVAKRTILKGKQKNKSFKIIPRSRTLTSVYDSILEDIVSPSEIIGKRISMKADGKRVFKIMLDSKERQRDNIEEKLISFAAVYKKITRRDAVFSLPPTNEK |
| 40S ribosomal protein S15A | K | 130 | Plasmodium Falciparum (Isolate 3D7) | MVRMSVLADCLKTINNAEKRGRRQVLIRPSSKVVIKFLQYMQKKGYIGSFEIVDDHRSGKIVVNLLGRINKCAVISPRYDVKLDEIEKIITSILPSRLFGHLILTTPYGIMDHEEARRKHTGGKVLGFFF |
| 40S ribosomal protein S8 | L | 218 | Plasmodium Falciparum (Isolate 3D7) | MGISRDGRHKLRLTGGKKKIHKKKRKYELGRPPSNTKLGSRQVHVVRGRGRNYKYRAIKLDSGSFSWPTFGISKNTRIIDVVYNASNNELVRTKTLVKNCIVVIDSHPFTTWYENTFGTTLGKKKKEKKEEDNKEENKQEVENNEEAAKDETTKTYGVIKKIGKSKNIDPLLLEQFKQGRVLACISSRPGQCGKADGYIIEGDELLFYKRKMDKKKRN |
| 40S ribosomal protein S16 | M | 144 | Plasmodium Falciparum (Isolate 3D7) | MTTKVKRVQTFGKKKTAVAVATVTNGKGLIKLNGKNLDLVEPYILKTKVYEPLWLIGSGKLKNLDIRIRVKGGGQTSQIYAIRQAIGKGIISYYQKYVDESTKKELKDVLLRYDRSLLVGDTRRCEPKKFGGKGARARYQKSYR |
| 40S ribosomal protein S20e | N | 118 | Plasmodium Falciparum (Isolate 3D7) | MSKLMKGAIDNEKYRLRRIRIALTSKNLRAIEKVCSDIMKGAKEKNLNVSGPVRLPVKTLRITTRKSPCGEGTNTWDRFELRIYKRLIDLYSQCEVVTQMTSINIDPVVEVEVIITDS |
| 40S ribosomal protein S10 | O | 137 | Plasmodium Falciparum (Isolate 3D7) | MDKQTLPHHKYSYIPKQNKKLIYEYLFKEGVIVVEKDAKIPRHPHLNVPNLHIMMTLKSLKSRNYVEEKYNWKHQYFILNNEGIEYLREFLHLPPSIFPATLSKKTVNRAPKMDEDISRDVRQPMGRGRAFDRRPFE |
| 40S ribosomal protein S11 | P | 151 | Plasmodium Falciparum (Isolate 3D7) | MASKKVKTPQPETAIVSGPQPKEGELVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMMAAQDVAARLKELGVTAIHIKLRASGGTKSKTPGPGAQSALRALARSGLKIGRIEDVTPIPTDSTRKKSGRRGRRL |
| 40S ribosomal protein S23 | Q | 145 | Plasmodium Falciparum (Isolate 3D7) | MGSGKPSGLRAARKLRIRRRTQRWADKSYKKSHLGTRWKSNPFRGSSHAKGIVVEKVAIEAKQPNSAYRKCVRVQLIKNGKKITAFVPGDGCLNFIDENDEVLVSGFGRSGHSVGDLPGVKFKVVKVARVSLLALFKEKKEKPRS |
| 40S ribosomal protein S12 | R | 141 | Plasmodium Falciparum (Isolate 3D7) | MSDVESADNNVVVEEKAVFDNVTAIQKVIKNAHVHDGLKIGIREVIKSIESQEAKVCFLSDVCSEPAYKKLITTLCAEKNIPLFMVQNDSKDLGHWAGLFKLDNEGNARKIIGASSVAVVDFGEDSAEKDFLLSQNQTVTA |
| 40S ribosomal protein S18 | S | 156 | Plasmodium Falciparum (Isolate 3D7) | MSLQVIDNNDFQHILRILNTNVDGKEKVIIALTAIKGIGKRMATVICKQANVDPTKRAGELTTEEIDNIVHIMSTPTQFKIPDWFLNRRKDLKEGKNIHVIANQLDSYLREDLERMKKIRLHRGLRHHWGLRVRGQHTKTTGRRGRTVGVAKKKGA |
| 40S ribosomal protein S25 | B | 105 | Plasmodium Falciparum (Isolate 3D7) | MPPKERKTKEQIAAAAAASGRTKKKKWGKGKNKEKLNHAVFIDKSLHSKILECKNMKVITPSAIAEKYKVNLSVARAVINHLADKKLIAEVCVQSHSQKLYTKVA |
| 40S ribosomal protein S29 | T | 54 | Plasmodium Falciparum (Isolate 3D7) | MGCILNVHPKKYGQGSRQCRVCSNKHAIIRKYNINICRQCFRERADIIGFKKYR |
| 40S ribosomal protein S15 | U | 151 | Plasmodium Falciparum (Isolate 3D7) | MGRMYGKGKGISSSTLPYKRKQPSWLKQKPSEIEDAIIKLAKKGQTPSQIGATLRDNYGIPQVKSVTGNKILRILRAQGIATTIPEDLYFLIKKAVSMRKHLEKNKKDKDCKFRLILTESKIHRISRYYKRKKLLPSNWKYQSSTASALIA |
| 40S ribosomal protein S11 | V | 161 | Plasmodium Falciparum (Isolate 3D7) | MATTLDVQHERAYQKQEGASFFNSKKIKKGSKSYIRYWKKVGLGFATPKEAKEGVYVDKKCPFTGNVSIRGRILKGMVISNKMKRTIIIRRNYLHYVKKYNRFEKRHKNIPCHCSPCFDVKEGDIVTVGQCRPLSKTVRFNVLHVEKHQIFGSARKQFVLF |
| 40S ribosomal protein S17 | W | 137 | Plasmodium Falciparum (Isolate 3D7) | MGRVRTKTIKRAARQIVEKYYAKLTLDFQINKKITEEVAIIPSKRMKNKVAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEKSQIDVSVIYVEPDTLRMIKSLGINISNMKVHNPMINTNQQKQNRMNNQF |
| 40S ribosomal protein S19 | X | 145 | Plasmodium Falciparum (Isolate 3D7) | MEDANKPKKRTFRTFQYRGVDLDKLLDLSQDELIKLFKARQRRKFQRGISKKAKSLLKKIRKSKKNCEPGEKPNPVPTHLRNMTIIPEMVGSIVAVHNGKQYTNVEIKPEMIGYYLGEFSITYKHTRHGKPGIGATHSSRFIPLK |
| 40S ribosomal protein S19 | Y | 170 | Plasmodium Falciparum (Isolate 3D7) | MAEQFTEDIGVVNKRLLEPVPFVKTNNCIKDVDADLFIRSYATHLKLHNKITYPKWCTFVKTGKGRKLAPLNEDWYFIRASSILRRLYLHPDIGVGFLRRQFSSKQRRGVAPNHTSLASGKILRSILQQLENLGYVEQNPKKKGRRLTTKGENAINNFARYINKKVYNKE |
| 40S ribosomal protein S21 | Z | 82 | Plasmodium Falciparum (Isolate 3D7) | MFNDQKVLVDIYIPRKCSATSRLIPAKEHGAVQINVGMVDANGVYNGKTETFAISGHVRQNGESDACLNRLMYEKKLLSFQN |
| 40S ribosomal protein SA | C | 263 | Plasmodium Falciparum (Isolate 3D7) | MSNKKGQSPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARIIVAISNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFTEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGVIPRSEPWNVMVDMFLWRDPEQFELKNLANEENTPTAPHLIENQYAAEAPYDEWTKKEEWNDNTNEDWKNPIAAEEW |
| 40S ribosomal protein S3 | D | 221 | Plasmodium Falciparum (Isolate 3D7) | MSAPISKKRKFINDGVFQAELNEFLARILAEDGYSGVEVRVTPIRTEVIIRATRTREVLGDKGRRIRELTSLVQKRFFNKSTNSVELFAERVEHRGLCAMAQAESLRYKLLKGLAVRRACYGVLRHIMESGAKGCEVIVSGKLRAQRAKSMKFRDGYLISTGEPSKRFVNTATRSAQLKQGVLGIKVKIMLPTAIDTRTGLTSILPDNISVLEPKTDTVDL |
| 40S ribosomal protein S9 | E | 189 | Plasmodium Falciparum (Isolate 3D7) | MPKSYRNYSKTARNPKRPFEKERLDQELKLIGEYGLKNKREIWRVQYLLAKIRSAARYLLTLDEKSSKRIFQGEALLRRMVRQGLLGENEEKLDYVLGLTLPKLLERRLQTKVFKLGLAKSVHHARVLIRQRHIRVGKQMVDIPSFLVRVDSEKHIDFATTSPFGGARPGRVKRKSLKKQKEKTEAEAE |
| 40S ribosomal protein S4 | F | 261 | Plasmodium Falciparum (Isolate 3D7) | MGKGIKKHLKRVNAPSHWMLNKMGGQYAPKTSSGPHKLLESIPLVILLRNRLKYALTFDEVKMILIQKIVKVDNKVRTDCTFPVGLMDVIHITKSNEYFRLLYDIKGRFVPHRITNEESKYKLCKVKKILLRKGRLSIAVTHDGRSIPYIHPDVKVNDTVRLDLETGKVLEHLKFQVGSLVMVTAGHSVGRVGVISSIDKNMGTYDIIHVKDSRNKVFATRLSNVFVIGDNTKPYISLPREKGIKLDIIEERRNRLKALNN |
| 40S ribosomal protein S5 | G | 272 | Plasmodium Falciparum (Isolate 3D7) | MEDRGGFSRGFGRGVRGTRGRGGRGARGRGRGSAEDDLKNWVPVTKLGRLVKEGKIVSIEEIYLHSLPIKEYQIIDYFFQPNECSHPLKDDVVKIMPVQKQTRAGQRTRFKAFVAIGDGNGHCGLGVKCAKEVATAIRGAIISAKLSLIPVRRGYWGNKIGDPHTVPMKVSGKCGSVRIRLVPAPRGTQIVGAPTTKKMLNFAGIKDCFSSSCGKTKTKGNFLRAIFNALSKTYGYLTPDLWKVTNFDKSPYEEWSDFLETYQNLKGIKGTV |
| 40S ribosomal protein S6 | H | 306 | Plasmodium Falciparum (Isolate 3D7) | MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNAVPGDSIGEEFTGYVFRITGGNDKQGFPMIQGVLTNNRVRLLFKKGMKCYRPRKKGERKRKSVRGCIVGQDLSALNLTLVKKGVNEIPGLTDKAVGKKLGPKRASKIRKLFNLDKSDDVRKYVIGRAITKNGKTKFIKPKIQRLVTEKRLLRKRNLLQAKEKRRLEKKQQLKEYKQLLNKYRSELNQQHDVETTKKKKVKKSLSKTNKTASKSKLNTKQEQKDKTEKKQNKTNNIKNDKSEKKEQAKKKTKTNENTQQTKQNKPDKKNKAKK |
| 40S ribosomal protein S5 | I | 195 | Plasmodium Falciparum (Isolate 3D7) | METTTADIKLFKKWSYEEINIADLSLVDCIAVSQKACVYTPHTAGRYQKKRFRKALCPIVERLVNSMMMHGRNNGKKLKAIRIVAYAFEIIHLMTGENPLQVFVNAVQKGGPREDSTRIGSAGVVRRQAVDVSPLRRVNQAIYLICTGARNAAFRNIKSISECLAEEIINCANESSSSYAIKKKDEIERVAKANR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-04-13 Deposition Author(s): Scheres, S.H.W. , Wong, W.