PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6OJ0

Cryo-em reconstruction of sulfolobus polyhedral virus 1 (spv1)

PDB DOI: 10.2210/pdb6oj0/pdb

Classification: VIRUS
Organism(s): Sulfolobus Polyhedral Virus 1

Deposited: 2019-04-10
Deposition Author(s): Conway, J.F. , Egelman, E.H. , Krupovic, M. , Liu, Y. , Prangishvili, D. , Wang, F.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

6oj0
Literature

Cryo-em reconstruction of sulfolobus polyhedral virus 1 (spv1)

Conway, J.F. , Egelman, E.H. , Krupovic, M. , Liu, Y. , Prangishvili, D. , Wang, F.

Primary Citation of Related Structures: 6OJ0


Proteins
Molecule Chains Sequence Length Organism Sequence
Structural protein VP4 T 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 U 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 V 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 W 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 X 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 G 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 N 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 O 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 P 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 Q 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 R 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 S 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 H 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 I 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 J 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 K 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 L 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 M 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 A 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 B 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 C 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 D 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 E 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Structural protein VP4 F 181 Sulfolobus Polyhedral Virus 1 MSESVTQQVFNFAVTKSQPFGGYVYSTNLTASTSSAVTSTQLTPLNLSITLGQITLSGNSLVIPATQIWYLTDAYVSVPDYTNITNGAEADGVILIYKDGVKLMLTTPLISSMSISNPARTHLAQAVKYSPQSILTMYFNPTKPATASTSYPNTVYFTVVVVDFSYAQNPARAVVSANAVM
Uncharacterized protein Z 187 Sulfolobus Polyhedral Virus 1 MLSLDNYSYVHNITTQTNIDLSSQQTIHLASINGKGYIIFLRFFCEGSSACFTNVKFSVKANGLVLYSFRYIQLLELGQAIATAIPSSSQGFSTLLSNYNVLISSPIGTLPQLTLYDSYDNRYGAMLQPAFPLPFVNTLSLDVDILPVSQSSYDPIPYSLNDNQISTNAPTGKGNISIEYLLYNCLV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-04-10
Deposition Author(s): Conway, J.F. , Egelman, E.H. , Krupovic, M. , Liu, Y. , Prangishvili, D. , Wang, F.