PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6OD7

Herpes simplex virus type 1 (hsv-1) pul6 portal protein, dodecameric complex

PDB DOI: 10.2210/pdb6od7/pdb

Classification: VIRAL PROTEIN
Organism(s): Human Herpesvirus 1 Strain Kos

Deposited: 2019-03-26
Deposition Author(s): Bi, G.Q. , Dai, X.H. , Jih, J. , Liu, Y.T. , Zhou, Z.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 5.6 Å

Literature

Herpes simplex virus type 1 (hsv-1) pul6 portal protein, dodecameric complex

Bi, G.Q. , Dai, X.H. , Jih, J. , Liu, Y.T. , Zhou, Z.H.

Primary Citation of Related Structures: 6OD7


Proteins
Molecule Chains Sequence Length Organism Sequence
Portal protein A 676 Human Herpesvirus 1 Strain Kos MTAPRSWAPTTRARGDTEALCSPEDGWVKVHPTPGTMLFREILHGQLGYTEGQGVYNVVRSSEATTRQLQAAIFHALLNATTYRDLEADWLGHVAARGLQPQRLVRRYRNAREADIAGVAERVFDTWRNTLRTTLLDFAHGLVACFAPGGPSGPSSFPKYIDWLTCLGLVPILRKRQEGGVTQGLRAFLKQHPLTRQLATVAEAAERAGPGFFELALAFDSTRVADYDRVYIYYNHRRGDWLVRDPISGQRGECLVLWPPLWTGDRLVFDSPVQRLFPEIVACHSLREHAHVCRLRNTASVKVLLGRKSDSERGVAGAARVVNKVLGEDDETKAGSAASRLVRLIINMKGMRHVGDINDTVRAYLDEAGGHLIDAPAVDGTLPGFGKGGNSRGSAGQDQGGRAPQLRQAFRTAVVNNINGVLEGYINNLFGTIERLRETNAGLATQLQERDRELRRATAGALERQQRAADLAAESVTGGCGSRPAGADLLRADYDIIDVSKSMDDDTYVANSFQHPYIPSYAQDLERLSRLWEHELVRCFKILCHRNNQGQETSISYSSGAIAAFVAPYFESVLRAPRVGAPITGSDVILGEEELWDAVFKKTRLQTYLTDIAALFVADVQHAALPPPPSPVGADFRPGASPRGRSRSRSPGRTAPGAPDQGGGIGHRDGRRDGRR
Portal protein B 676 Human Herpesvirus 1 Strain Kos MTAPRSWAPTTRARGDTEALCSPEDGWVKVHPTPGTMLFREILHGQLGYTEGQGVYNVVRSSEATTRQLQAAIFHALLNATTYRDLEADWLGHVAARGLQPQRLVRRYRNAREADIAGVAERVFDTWRNTLRTTLLDFAHGLVACFAPGGPSGPSSFPKYIDWLTCLGLVPILRKRQEGGVTQGLRAFLKQHPLTRQLATVAEAAERAGPGFFELALAFDSTRVADYDRVYIYYNHRRGDWLVRDPISGQRGECLVLWPPLWTGDRLVFDSPVQRLFPEIVACHSLREHAHVCRLRNTASVKVLLGRKSDSERGVAGAARVVNKVLGEDDETKAGSAASRLVRLIINMKGMRHVGDINDTVRAYLDEAGGHLIDAPAVDGTLPGFGKGGNSRGSAGQDQGGRAPQLRQAFRTAVVNNINGVLEGYINNLFGTIERLRETNAGLATQLQERDRELRRATAGALERQQRAADLAAESVTGGCGSRPAGADLLRADYDIIDVSKSMDDDTYVANSFQHPYIPSYAQDLERLSRLWEHELVRCFKILCHRNNQGQETSISYSSGAIAAFVAPYFESVLRAPRVGAPITGSDVILGEEELWDAVFKKTRLQTYLTDIAALFVADVQHAALPPPPSPVGADFRPGASPRGRSRSRSPGRTAPGAPDQGGGIGHRDGRRDGRR
Portal protein C 676 Human Herpesvirus 1 Strain Kos MTAPRSWAPTTRARGDTEALCSPEDGWVKVHPTPGTMLFREILHGQLGYTEGQGVYNVVRSSEATTRQLQAAIFHALLNATTYRDLEADWLGHVAARGLQPQRLVRRYRNAREADIAGVAERVFDTWRNTLRTTLLDFAHGLVACFAPGGPSGPSSFPKYIDWLTCLGLVPILRKRQEGGVTQGLRAFLKQHPLTRQLATVAEAAERAGPGFFELALAFDSTRVADYDRVYIYYNHRRGDWLVRDPISGQRGECLVLWPPLWTGDRLVFDSPVQRLFPEIVACHSLREHAHVCRLRNTASVKVLLGRKSDSERGVAGAARVVNKVLGEDDETKAGSAASRLVRLIINMKGMRHVGDINDTVRAYLDEAGGHLIDAPAVDGTLPGFGKGGNSRGSAGQDQGGRAPQLRQAFRTAVVNNINGVLEGYINNLFGTIERLRETNAGLATQLQERDRELRRATAGALERQQRAADLAAESVTGGCGSRPAGADLLRADYDIIDVSKSMDDDTYVANSFQHPYIPSYAQDLERLSRLWEHELVRCFKILCHRNNQGQETSISYSSGAIAAFVAPYFESVLRAPRVGAPITGSDVILGEEELWDAVFKKTRLQTYLTDIAALFVADVQHAALPPPPSPVGADFRPGASPRGRSRSRSPGRTAPGAPDQGGGIGHRDGRRDGRR
Portal protein D 676 Human Herpesvirus 1 Strain Kos MTAPRSWAPTTRARGDTEALCSPEDGWVKVHPTPGTMLFREILHGQLGYTEGQGVYNVVRSSEATTRQLQAAIFHALLNATTYRDLEADWLGHVAARGLQPQRLVRRYRNAREADIAGVAERVFDTWRNTLRTTLLDFAHGLVACFAPGGPSGPSSFPKYIDWLTCLGLVPILRKRQEGGVTQGLRAFLKQHPLTRQLATVAEAAERAGPGFFELALAFDSTRVADYDRVYIYYNHRRGDWLVRDPISGQRGECLVLWPPLWTGDRLVFDSPVQRLFPEIVACHSLREHAHVCRLRNTASVKVLLGRKSDSERGVAGAARVVNKVLGEDDETKAGSAASRLVRLIINMKGMRHVGDINDTVRAYLDEAGGHLIDAPAVDGTLPGFGKGGNSRGSAGQDQGGRAPQLRQAFRTAVVNNINGVLEGYINNLFGTIERLRETNAGLATQLQERDRELRRATAGALERQQRAADLAAESVTGGCGSRPAGADLLRADYDIIDVSKSMDDDTYVANSFQHPYIPSYAQDLERLSRLWEHELVRCFKILCHRNNQGQETSISYSSGAIAAFVAPYFESVLRAPRVGAPITGSDVILGEEELWDAVFKKTRLQTYLTDIAALFVADVQHAALPPPPSPVGADFRPGASPRGRSRSRSPGRTAPGAPDQGGGIGHRDGRRDGRR
Portal protein E 676 Human Herpesvirus 1 Strain Kos MTAPRSWAPTTRARGDTEALCSPEDGWVKVHPTPGTMLFREILHGQLGYTEGQGVYNVVRSSEATTRQLQAAIFHALLNATTYRDLEADWLGHVAARGLQPQRLVRRYRNAREADIAGVAERVFDTWRNTLRTTLLDFAHGLVACFAPGGPSGPSSFPKYIDWLTCLGLVPILRKRQEGGVTQGLRAFLKQHPLTRQLATVAEAAERAGPGFFELALAFDSTRVADYDRVYIYYNHRRGDWLVRDPISGQRGECLVLWPPLWTGDRLVFDSPVQRLFPEIVACHSLREHAHVCRLRNTASVKVLLGRKSDSERGVAGAARVVNKVLGEDDETKAGSAASRLVRLIINMKGMRHVGDINDTVRAYLDEAGGHLIDAPAVDGTLPGFGKGGNSRGSAGQDQGGRAPQLRQAFRTAVVNNINGVLEGYINNLFGTIERLRETNAGLATQLQERDRELRRATAGALERQQRAADLAAESVTGGCGSRPAGADLLRADYDIIDVSKSMDDDTYVANSFQHPYIPSYAQDLERLSRLWEHELVRCFKILCHRNNQGQETSISYSSGAIAAFVAPYFESVLRAPRVGAPITGSDVILGEEELWDAVFKKTRLQTYLTDIAALFVADVQHAALPPPPSPVGADFRPGASPRGRSRSRSPGRTAPGAPDQGGGIGHRDGRRDGRR
Portal protein F 676 Human Herpesvirus 1 Strain Kos MTAPRSWAPTTRARGDTEALCSPEDGWVKVHPTPGTMLFREILHGQLGYTEGQGVYNVVRSSEATTRQLQAAIFHALLNATTYRDLEADWLGHVAARGLQPQRLVRRYRNAREADIAGVAERVFDTWRNTLRTTLLDFAHGLVACFAPGGPSGPSSFPKYIDWLTCLGLVPILRKRQEGGVTQGLRAFLKQHPLTRQLATVAEAAERAGPGFFELALAFDSTRVADYDRVYIYYNHRRGDWLVRDPISGQRGECLVLWPPLWTGDRLVFDSPVQRLFPEIVACHSLREHAHVCRLRNTASVKVLLGRKSDSERGVAGAARVVNKVLGEDDETKAGSAASRLVRLIINMKGMRHVGDINDTVRAYLDEAGGHLIDAPAVDGTLPGFGKGGNSRGSAGQDQGGRAPQLRQAFRTAVVNNINGVLEGYINNLFGTIERLRETNAGLATQLQERDRELRRATAGALERQQRAADLAAESVTGGCGSRPAGADLLRADYDIIDVSKSMDDDTYVANSFQHPYIPSYAQDLERLSRLWEHELVRCFKILCHRNNQGQETSISYSSGAIAAFVAPYFESVLRAPRVGAPITGSDVILGEEELWDAVFKKTRLQTYLTDIAALFVADVQHAALPPPPSPVGADFRPGASPRGRSRSRSPGRTAPGAPDQGGGIGHRDGRRDGRR
Portal protein G 676 Human Herpesvirus 1 Strain Kos MTAPRSWAPTTRARGDTEALCSPEDGWVKVHPTPGTMLFREILHGQLGYTEGQGVYNVVRSSEATTRQLQAAIFHALLNATTYRDLEADWLGHVAARGLQPQRLVRRYRNAREADIAGVAERVFDTWRNTLRTTLLDFAHGLVACFAPGGPSGPSSFPKYIDWLTCLGLVPILRKRQEGGVTQGLRAFLKQHPLTRQLATVAEAAERAGPGFFELALAFDSTRVADYDRVYIYYNHRRGDWLVRDPISGQRGECLVLWPPLWTGDRLVFDSPVQRLFPEIVACHSLREHAHVCRLRNTASVKVLLGRKSDSERGVAGAARVVNKVLGEDDETKAGSAASRLVRLIINMKGMRHVGDINDTVRAYLDEAGGHLIDAPAVDGTLPGFGKGGNSRGSAGQDQGGRAPQLRQAFRTAVVNNINGVLEGYINNLFGTIERLRETNAGLATQLQERDRELRRATAGALERQQRAADLAAESVTGGCGSRPAGADLLRADYDIIDVSKSMDDDTYVANSFQHPYIPSYAQDLERLSRLWEHELVRCFKILCHRNNQGQETSISYSSGAIAAFVAPYFESVLRAPRVGAPITGSDVILGEEELWDAVFKKTRLQTYLTDIAALFVADVQHAALPPPPSPVGADFRPGASPRGRSRSRSPGRTAPGAPDQGGGIGHRDGRRDGRR
Portal protein H 676 Human Herpesvirus 1 Strain Kos MTAPRSWAPTTRARGDTEALCSPEDGWVKVHPTPGTMLFREILHGQLGYTEGQGVYNVVRSSEATTRQLQAAIFHALLNATTYRDLEADWLGHVAARGLQPQRLVRRYRNAREADIAGVAERVFDTWRNTLRTTLLDFAHGLVACFAPGGPSGPSSFPKYIDWLTCLGLVPILRKRQEGGVTQGLRAFLKQHPLTRQLATVAEAAERAGPGFFELALAFDSTRVADYDRVYIYYNHRRGDWLVRDPISGQRGECLVLWPPLWTGDRLVFDSPVQRLFPEIVACHSLREHAHVCRLRNTASVKVLLGRKSDSERGVAGAARVVNKVLGEDDETKAGSAASRLVRLIINMKGMRHVGDINDTVRAYLDEAGGHLIDAPAVDGTLPGFGKGGNSRGSAGQDQGGRAPQLRQAFRTAVVNNINGVLEGYINNLFGTIERLRETNAGLATQLQERDRELRRATAGALERQQRAADLAAESVTGGCGSRPAGADLLRADYDIIDVSKSMDDDTYVANSFQHPYIPSYAQDLERLSRLWEHELVRCFKILCHRNNQGQETSISYSSGAIAAFVAPYFESVLRAPRVGAPITGSDVILGEEELWDAVFKKTRLQTYLTDIAALFVADVQHAALPPPPSPVGADFRPGASPRGRSRSRSPGRTAPGAPDQGGGIGHRDGRRDGRR
Portal protein I 676 Human Herpesvirus 1 Strain Kos MTAPRSWAPTTRARGDTEALCSPEDGWVKVHPTPGTMLFREILHGQLGYTEGQGVYNVVRSSEATTRQLQAAIFHALLNATTYRDLEADWLGHVAARGLQPQRLVRRYRNAREADIAGVAERVFDTWRNTLRTTLLDFAHGLVACFAPGGPSGPSSFPKYIDWLTCLGLVPILRKRQEGGVTQGLRAFLKQHPLTRQLATVAEAAERAGPGFFELALAFDSTRVADYDRVYIYYNHRRGDWLVRDPISGQRGECLVLWPPLWTGDRLVFDSPVQRLFPEIVACHSLREHAHVCRLRNTASVKVLLGRKSDSERGVAGAARVVNKVLGEDDETKAGSAASRLVRLIINMKGMRHVGDINDTVRAYLDEAGGHLIDAPAVDGTLPGFGKGGNSRGSAGQDQGGRAPQLRQAFRTAVVNNINGVLEGYINNLFGTIERLRETNAGLATQLQERDRELRRATAGALERQQRAADLAAESVTGGCGSRPAGADLLRADYDIIDVSKSMDDDTYVANSFQHPYIPSYAQDLERLSRLWEHELVRCFKILCHRNNQGQETSISYSSGAIAAFVAPYFESVLRAPRVGAPITGSDVILGEEELWDAVFKKTRLQTYLTDIAALFVADVQHAALPPPPSPVGADFRPGASPRGRSRSRSPGRTAPGAPDQGGGIGHRDGRRDGRR
Portal protein J 676 Human Herpesvirus 1 Strain Kos MTAPRSWAPTTRARGDTEALCSPEDGWVKVHPTPGTMLFREILHGQLGYTEGQGVYNVVRSSEATTRQLQAAIFHALLNATTYRDLEADWLGHVAARGLQPQRLVRRYRNAREADIAGVAERVFDTWRNTLRTTLLDFAHGLVACFAPGGPSGPSSFPKYIDWLTCLGLVPILRKRQEGGVTQGLRAFLKQHPLTRQLATVAEAAERAGPGFFELALAFDSTRVADYDRVYIYYNHRRGDWLVRDPISGQRGECLVLWPPLWTGDRLVFDSPVQRLFPEIVACHSLREHAHVCRLRNTASVKVLLGRKSDSERGVAGAARVVNKVLGEDDETKAGSAASRLVRLIINMKGMRHVGDINDTVRAYLDEAGGHLIDAPAVDGTLPGFGKGGNSRGSAGQDQGGRAPQLRQAFRTAVVNNINGVLEGYINNLFGTIERLRETNAGLATQLQERDRELRRATAGALERQQRAADLAAESVTGGCGSRPAGADLLRADYDIIDVSKSMDDDTYVANSFQHPYIPSYAQDLERLSRLWEHELVRCFKILCHRNNQGQETSISYSSGAIAAFVAPYFESVLRAPRVGAPITGSDVILGEEELWDAVFKKTRLQTYLTDIAALFVADVQHAALPPPPSPVGADFRPGASPRGRSRSRSPGRTAPGAPDQGGGIGHRDGRRDGRR
Portal protein K 676 Human Herpesvirus 1 Strain Kos MTAPRSWAPTTRARGDTEALCSPEDGWVKVHPTPGTMLFREILHGQLGYTEGQGVYNVVRSSEATTRQLQAAIFHALLNATTYRDLEADWLGHVAARGLQPQRLVRRYRNAREADIAGVAERVFDTWRNTLRTTLLDFAHGLVACFAPGGPSGPSSFPKYIDWLTCLGLVPILRKRQEGGVTQGLRAFLKQHPLTRQLATVAEAAERAGPGFFELALAFDSTRVADYDRVYIYYNHRRGDWLVRDPISGQRGECLVLWPPLWTGDRLVFDSPVQRLFPEIVACHSLREHAHVCRLRNTASVKVLLGRKSDSERGVAGAARVVNKVLGEDDETKAGSAASRLVRLIINMKGMRHVGDINDTVRAYLDEAGGHLIDAPAVDGTLPGFGKGGNSRGSAGQDQGGRAPQLRQAFRTAVVNNINGVLEGYINNLFGTIERLRETNAGLATQLQERDRELRRATAGALERQQRAADLAAESVTGGCGSRPAGADLLRADYDIIDVSKSMDDDTYVANSFQHPYIPSYAQDLERLSRLWEHELVRCFKILCHRNNQGQETSISYSSGAIAAFVAPYFESVLRAPRVGAPITGSDVILGEEELWDAVFKKTRLQTYLTDIAALFVADVQHAALPPPPSPVGADFRPGASPRGRSRSRSPGRTAPGAPDQGGGIGHRDGRRDGRR
Portal protein L 676 Human Herpesvirus 1 Strain Kos MTAPRSWAPTTRARGDTEALCSPEDGWVKVHPTPGTMLFREILHGQLGYTEGQGVYNVVRSSEATTRQLQAAIFHALLNATTYRDLEADWLGHVAARGLQPQRLVRRYRNAREADIAGVAERVFDTWRNTLRTTLLDFAHGLVACFAPGGPSGPSSFPKYIDWLTCLGLVPILRKRQEGGVTQGLRAFLKQHPLTRQLATVAEAAERAGPGFFELALAFDSTRVADYDRVYIYYNHRRGDWLVRDPISGQRGECLVLWPPLWTGDRLVFDSPVQRLFPEIVACHSLREHAHVCRLRNTASVKVLLGRKSDSERGVAGAARVVNKVLGEDDETKAGSAASRLVRLIINMKGMRHVGDINDTVRAYLDEAGGHLIDAPAVDGTLPGFGKGGNSRGSAGQDQGGRAPQLRQAFRTAVVNNINGVLEGYINNLFGTIERLRETNAGLATQLQERDRELRRATAGALERQQRAADLAAESVTGGCGSRPAGADLLRADYDIIDVSKSMDDDTYVANSFQHPYIPSYAQDLERLSRLWEHELVRCFKILCHRNNQGQETSISYSSGAIAAFVAPYFESVLRAPRVGAPITGSDVILGEEELWDAVFKKTRLQTYLTDIAALFVADVQHAALPPPPSPVGADFRPGASPRGRSRSRSPGRTAPGAPDQGGGIGHRDGRRDGRR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-03-26
Deposition Author(s): Bi, G.Q. , Dai, X.H. , Jih, J. , Liu, Y.T. , Zhou, Z.H.