6O8Y
Cryo-em image reconstruction of the 70s ribosome enterococcus faecalis class03
PDB DOI: 10.2210/pdb6o8y/pdb
Classification: RIBOSOME Organism(s): Enterococcus Faecalis
Deposited: 2019-03-12 Deposition Author(s): Jogl, G. , Khayat, R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.14 Å
Cryo-em image reconstruction of the 70s ribosome enterococcus faecalis class03
Primary Citation of Related Structures: 6O8Y
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23S rRNA | a | 2903 | NA | UUAAGUGAAUAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACUAACACCGAUAUGCUUUGGGGAGCUGUAAGUAAGCUAUGAUCCAGAGAUUUCCGAAUGGGGGAACCCAAUAUCUUUUAUAGGAUAUUACUUUUCAGUGAAUACAUAGCUGAUUAGAGGUAGACGCAGAGAACUGAAACAUCUUAGUACCUGCAGGAAGAGAAAGAAAAUUCGAUUCCCUGAGUAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCUUGCUUGUUGGGGUUGUAGGACUCCGAUAUGGUAGUCUGUUAGUAUAGUUGAAGGAUUUGGAAAAUUCCGCUAAAGAGGGUGAAAGCCCCGUAGACGAAAUGCUGACAACACCUAGGAGGAUCCUGAGUACGGCGGAACACGAGAAAUUCCGUCGGAAUCCGCGGGGACCAUCCCGCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAUAGAUCCUGAAACCGUGUGCCUACAACAAGUCAAAGCUCGUUAAUGAGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUUGCAUGCGAGGUUAAGUCGAAGAGACGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGAAUGAGUAUGUAGUCGUAGACCCGAAACCAUGUGAUCUACCCAUGUCCAGGUUGAAGGUGCGGUAAAACGCACUGGAGGACCGAACCCACGUACGUUGAAAAGUGCGGGGAUGAGGUGUGGGUAGCGGAGAAAUUCCAAACGAACUUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCGGAAUUGAGAAUGAUGGAGGUAGAGCACUGUUUGGACUAGGGGCCCAUCGGGUUACCGAAUUCAGAUAAACUCCGAAUGCCAUUCAUUUAUAUCCGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCACCAGCUAAGGUCCCAAAAUAUAUGUUAAGUGGAAAAGGAUGUGGGGUUGCACAGACAACUAGGAUGUUGGCUUAGAAGCAGCCACCAUUUAAAGAGUGCGUAAUAGCUCACUAGUCGAGUGACCCUGCGCCGAAAAUGUACCGGGGCUAAACAUAUUACCGAAGCUGUGGACUACACCAUUAGGUGUAGUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGGUCGAUCGUGAGGACGGCUGGAGCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGACAGGUGAGAAUCCUGUCCACCGUAUGACUAAGGUUUCCUGGGGAAGGCUCGUCCGCCCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAUAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACCAGUUGUUUUUGUUUGAGCAAUGGAGGGACGCAGUAGGCUAAGGAAUGCAUGCGAUUGGAAGUGCAUGUCCAAGCAAUGAGUCUUGAGUAGAGUUAAAUGCUUUACUCUUUAAGGACAAGUUGUGACGGGGAGCGAAAUAGUAGCGAAGUUCCUGACGUCACACUGCCAAGAAAAGCUUCUAGUGAGAAAACAACUGCCCGUACCGUAAACCGACACAGGUAGUCGAGGAGAGUAUCCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUGACUUCGGUCAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCAAAAUCGUAAGAUGAAGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAUGGGUUAGCUUCGGCGAAGCUCAGAAUUGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAACGAUUUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUUUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCAUGGAGCUUUACUGUAGUUUGAUAUUGAGUGUUUGUACCACAUGUACAGGAUAGGUAGGAGCCGAUGAGACCGGAACGCUAGUUUCGGAGGAGGCGCUGGUGGGAUACUACCCUUGUGUUAUGAACCCUCUAACCCGCACCACUAAUCGUGGUGGGAGACAGUGUCAGAUGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGGUUGGAAAUCAUUCGAAGAGUGUAAAGGCAGAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCUGGGGAUAACAGGCUUAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGUUGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACUUACCGCUGGUGUACCAGUUGUUCUGCCAAGGGCAUUGCUGGGUAGCUAUGUAGGGAAGGGAUAAACGCUGAAAGCAUCUAAGUGUGAAGCCCACCUCAAGAUGAGAUUUCCCAUUUCUUUAAGAAAGUAAGACCCCUGAGAGAUGAUCAGGUAGAUAGGUUGGAAGUGGAAGGCUAGUGAUAGUUGGAGCGGACCAAUACUAAUCGGUCGAGGACUUAAC |
| 5S rRNA | b | 116 | NA | UGUGGUGGCGAUAGCGAGAAGGAUACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUUCUUAGCGCCGAUUGUAGUGAAGGGUUUCCCUUUGUGAGAGUAGGACGUCGCCACGC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L13 | K | 145 | Enterococcus Faecalis | MRTTYMAKAGEVERKWYVVDATDVPLGRLSAVVASVLRGKNKPTFTPHVDTGDFVIVINADKVKLTGKKATDKIYYRHSMYPGGLKSVTAGELRDKNSRRLIETSVKGMLPKNTLGRKQFTKLNVYGGAEHPHAAQQPEVLDITN |
| 50S ribosomal protein L14 | L | 122 | Enterococcus Faecalis | MIQQESRLRVADNSGAREILTIKVLGGSGRKTANIGDVIVATVKQATPGGVVKKGEVVKAVIVRTKSGARRADGSYIKFDENAAVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPEVL |
| 50S ribosomal protein L15 | M | 146 | Enterococcus Faecalis | MKLHELKPAEGSRQVRNRVGRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPKRGFTNINRKDYAVVNLDTLNRFEDGTEVTPVVLKEAGIVKNEKAGIKVLADGELTKKLTVKAAKFSKSAQEAIEAAGGSIEVI |
| 50S ribosomal protein L16 | N | 141 | Enterococcus Faecalis | MLVPKRVKHRREFRGKMRGEAKGGKEVAFGEWGLQATESHWITNRQIEAARIAMTRYMKRGGKVWIKIFPHKSYTSKAIGVRMGKGKGAPEGWVSPVKRGKIMFEIAGVPEEVAREALRLASHKLPVKTKIVKREEMGGES |
| 50S ribosomal protein L17 | O | 123 | Enterococcus Faecalis | RKLGRTSSQRKAMLRDITTDLIINERIVTTEARAKEVRSTVEKMITLGKRGDLHARRQAATFVRNEVASVREEDESIVVESALQKLFNDLGPRFAERQGGYTRILKTEPRRGDAAPMVVIEFV |
| 50S ribosomal protein L18 | P | 117 | Enterococcus Faecalis | ITKPDKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASASALDKEISGGTKTETAAAVGKLVAERAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLEF |
| 50S ribosomal protein L19 | Q | 114 | Enterococcus Faecalis | NPLIQELTQEQLRTDIPAFRPGDTVRVHAKVVEGTRERIQLFEGVVIKRRGAGISETYTVRKVSNGVGVERTFPLHTPRVAQIEVVRYGKVRRAKLYYLRALHGKAARIKEIRR |
| 50S ribosomal protein L20 | R | 118 | Enterococcus Faecalis | ARVKGGTVTRKRRKKVLKLAKGYYGSKHTLFKSAKEQVMNSYYYAFRDRRQKKRDFRKLWIARINAAARMNGLSYSKLMHGLKLAEIDINRKMLADLAVNDAAAFTALAEQAKDALSK |
| 50S ribosomal protein L21 | S | 102 | Enterococcus Faecalis | MYAIIKTGGKQVKVEVGQAIYVEKLNVEAGEKVVFDEVILVGGESTKVGAPTVAGATVEGTVEKHGKQKKVVTFQYKPKKHSHRKQGHRQPYTKVMIEAINA |
| 50S ribosomal protein L22 | T | 112 | Enterococcus Faecalis | QITSAKATAKTVRTSPRKARLVIDLIRGKSVADAISILKFTPNKSAGIIEKVLMSAVANAENNFDLDVESLVVSEAFVNEGPTMKRFRPRAKGSASPINKRTSHITVVVTEK |
| 50S ribosomal protein L2 | C | 275 | Enterococcus Faecalis | AIKKYKPTTNGRRNMTSSDFAEITTSTPEKSLLQPLKNNAGRNNNGRITVRHQGGGHKRQYRVIDFKRNKDNVAAVVKTIEYDPNRSANIALVHYEDGVKAYILAPKGLEVGMRLVSGPEADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGTSAQVLGKEGKYVLIRLNSGEVRMILATCRATIGSVGNEQHELINIGKAGRSRWMRKRPTVRGSVMNPNDHPHGGGEGKTPIGRKAPVSPWGQPAIGYKTRNKKAKSDKLIVRRRTK |
| 30S ribosomal protein S4 | D | 201 | Enterococcus Faecalis | SRYTGPSWKVSRRLGISLSGTGKELARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRHMYGMNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHGHITVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVEATVGRPAFVSFDTEKLEGSFTRLPERDELYPEIDEALVVEYYNQK |
| 30S ribosomal protein S5 | E | 163 | Enterococcus Faecalis | YIDPKHLELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLVEVPMVGSTIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGVADITSKSLGSNTPINVVRATVEGLKQLKRAEEVAALRGKSVEEII |
| 30S ribosomal protein S6 | F | 97 | Enterococcus Faecalis | QDTKYEIMYIIRPNIDEEAKTALVERFDTILKDNGAEVIESKDWEKRRLAYEMNGFREGIYHIVNVTSPSTAGAINEFDRLAKINDDIIRHMIVKVE |
| 30S ribosomal protein S7 | G | 154 | Enterococcus Faecalis | PRKGPVAKRDVLPDPIYNSKLVTRLINRVMVDGKRGIAANIIYNSFDIIKESTGNDPLEVFEQAMKNVMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWVVNYARLRGEHTMEERLAKEIMDAANNTGASVKKREDTHKMADANRAFAHYR |
| 50S ribosomal protein L23 | U | 89 | Enterococcus Faecalis | ELLDVIKRPVITEKSMLAMDEKKYTFEVDTRANKTLVKQAVESAFDVKVANVNILNVRPKFKRMGKYAGYTKKRRKAIVTLTEDSKEIQ |
| 50S ribosomal protein L24 | V | 101 | Enterococcus Faecalis | MFVKKGDKVKVITGKDKNKEGVVLAAFPKQDKVIVEGVNVVKKHQKPNQAAPQGGILEVEAPIHVSNVMVIDPSNGEATKVAFKEVDGKKVRVSKKTGEVL |
| 50S ribosomal protein L25 | W | 94 | Enterococcus Faecalis | VQLEVKERAIRPRSLRNQLRHEGKVPAIVYGYQIESTPIYFEEKDLSKILREHGANTVIKMTVDGKNINTLMSKAQLDTFTGQMLHVEFLSVNM |
| 50S ribosomal protein L27 | X | 76 | Enterococcus Faecalis | STSNGRDSESKRLGAKSADGQTVTGGSILYRQRGTKIYPGVNVGIGGDDTLFAKVDGVVRFERKGRDKKQVSVYPV |
| 50S ribosomal protein L28 | Y | 54 | Enterococcus Faecalis | AKVCYFTGRKTSSGNNRSHAMNSTKRTVKPNLQKVRVLIDGKPKKVWVSARALK |
| 50S ribosomal protein L29 | Z | 61 | Enterococcus Faecalis | KVKEIRELTTAEMLDKEKQLKEELFNLRFQLATGQLENTARIKEVRQSIARIKTVLREQAN |
| 50S ribosomal protein L30 | 0 | 58 | Enterococcus Faecalis | AELKITLKRSVIGRPQNQRATVKALGLGKVNSTVTKPANEAIKGMVNTISHLVDVEEV |
| 50S ribosomal protein L31 type B | 1 | 60 | Enterococcus Faecalis | MKQDIHPNYQPVVFMDSTTGFKFLSGSTKGSSETVEWEDGNTYPLLRVEVTSDSHPFYTG |
| 50S ribosomal protein L32 | 2 | 56 | Enterococcus Faecalis | AVPARRTSKAKKAKRRTHYKLTIKGLNACSNCGEMKKSHHVCPACGHYDGKDVMSK |
| 50S ribosomal protein L33 | 3 | 49 | Enterococcus Faecalis | MRVNITLECTSCKERNYLTNKNKRNNPDRLEKQKYCPRERKVTLHRETK |
| 50S ribosomal protein L34 | 4 | 44 | Enterococcus Faecalis | MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVISA |
| 50S ribosomal protein L35 | 5 | 64 | Enterococcus Faecalis | PKQKTHRGLAKRVKRTGGGGLKRGRAFTSHRFHGKTKKQRRQLRKASMVAKGDYKRIRQQLARM |
| 50S ribosomal protein L36 | 6 | 38 | Enterococcus Faecalis | MKVRPSVKPMCEHCKVIRRKGRVMVICPANPKHKQRQG |
| 30S ribosomal protein S8 | H | 131 | Enterococcus Faecalis | VMTDPIADFLTRIRNANMVKHETLEVPASKIKRDIAEILKREGFIRDVEYIEDDKQGVIRVFLKYGKNEERVITNLKRISKPGLRAYVKADEVPKVLNGLGIAIISTSEGVITDKEARAKNIGGEVIAYVW |
| 30S ribosomal protein S9 | I | 128 | Enterococcus Faecalis | QVQYSGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLREVINQPFGVTETKGAYDVIVNVNGGGYAGQSGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR |
| 30S ribosomal protein S10 | J | 99 | Enterococcus Faecalis | QKIRIRLKAYEHRILDQSADKIVETAKRTGADVSGPIPLPTERSLYTVIRATHKYKDSREQFEMRTHKRLIDIVNPTPKTVDALMKLDLPSGVNIEIKL |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-03-12 Deposition Author(s): Jogl, G. , Khayat, R.